Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5127

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13493 and 13494 are separated by 123 nucleotides13494 and 13495 are separated by 287 nucleotides13495 and 13496 are separated by 658 nucleotides mRNA_5125: 13493 - Interpro Protein of unknown function (DUF3431), at 1,818,424 to 1,820,541 13493 mRNA_5126: 13494 - Hypothetical Protein, at 1,820,665 to 1,821,231 13494 mRNA_5127: 13495 - K07941 ARF6 ADP-ribosylation factor 6, at 1,821,519 to 1,822,822 13495 mRNA_5128: 13496 - K08342 ATG4 cysteine protease ATG4, at 1,823,481 to 1,827,071 13496

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,820,854 - 13494 mRNA_5126 0.33 -0.5
1,820,855 - 13494 mRNA_5126 0.34 -0.4
1,820,857 - 13494 mRNA_5126 0.34 +1.5
1,820,867 - 13494 mRNA_5126 0.36 +2.2
1,820,962 - 13494 mRNA_5126 0.52 +0.8
1,821,010 + 13494 mRNA_5126 0.61 +2.2
1,821,052 + 13494 mRNA_5126 0.68 +0.8
1,821,441 + -0.5
1,822,625 - 13495 mRNA_5127 0.85 +0.6
1,822,922 - +0.4
1,822,955 + +0.6
1,822,968 + +0.7
1,822,968 + +0.4
1,822,985 - -0.3
1,822,994 + -0.7
1,823,083 - +0.9
1,823,106 + +0.5
1,823,256 + -0.4
1,823,272 + +1.2
1,823,386 - +0.4
1,823,406 - -0.2
1,823,543 + +0.6
1,823,689 + -0.4
1,823,725 + +0.0
1,823,731 + +0.8
1,823,814 + -0.0

Or see this region's nucleotide sequence