Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5136

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13503 and 13504 are separated by 249 nucleotides13504 and 13505 are separated by 356 nucleotides mRNA_5135: 13503 - KOG2112 Lysophospholipase, at 1,838,098 to 1,839,566 13503 mRNA_5136: 13504 - BLAST MYB DNA-binding domain protein [Macrophomina phaseoli..., at 1,839,816 to 1,840,478 13504 mRNA_5137: 13505 - K13342 PEX5, PXR1 peroxin-5, at 1,840,835 to 1,843,889 13505

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,838,869 - 13503 mRNA_5135 0.52 -0.7
1,839,052 + 13503 mRNA_5135 0.65 +1.9
1,839,353 + 13503 mRNA_5135 0.85 -2.2
1,839,629 + +0.4
1,839,955 + 13504 mRNA_5136 0.21 +1.2
1,840,084 + 13504 mRNA_5136 0.40 +0.0
1,840,509 - -2.0
1,840,535 - +0.0
1,840,652 - +0.2
1,840,664 - +2.2
1,840,672 + -0.0
1,840,672 - +0.1
1,840,674 + +0.4
1,840,683 - -1.0
1,840,684 - +1.2
1,840,704 - -0.1
1,840,722 + -0.2
1,840,852 - +0.2
1,841,132 - -0.7

Or see this region's nucleotide sequence