Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5143

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13511 and 13512 are separated by 854 nucleotides mRNA_5143: 13511 - K12763 SOK2 protein SOK2, at 4,212 to 7,292 13511 mRNA_5144: 13512 - BLAST putative mit domain-containing protein [Erysiphe neca..., at 8,147 to 8,373 13512

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
3,478 + +1.4
3,502 + -0.5
3,509 + -0.0
3,622 + -1.3
3,622 + -0.4
3,628 + +1.6
3,641 + +0.8
3,726 - +1.2
3,741 + +1.1
3,765 + +0.2
3,803 + -1.0
4,034 + +1.5
4,475 - -0.2
4,479 - -3.2
4,526 + 13511 mRNA_5143 0.10 -0.5
4,663 - 13511 mRNA_5143 0.15 -1.4
4,792 + 13511 mRNA_5143 0.19 +0.2
4,817 + 13511 mRNA_5143 0.20 +0.6
4,909 + 13511 mRNA_5143 0.23 -1.2
4,931 + 13511 mRNA_5143 0.23 +1.0
4,947 - 13511 mRNA_5143 0.24 +1.6
4,976 + 13511 mRNA_5143 0.25 +0.9
5,012 + 13511 mRNA_5143 0.26 -0.9
5,088 + 13511 mRNA_5143 0.28 +0.8
5,089 - 13511 mRNA_5143 0.28 +0.3
5,095 + 13511 mRNA_5143 0.29 -1.9
5,266 + 13511 mRNA_5143 0.34 -0.0
5,319 + 13511 mRNA_5143 0.36 +1.0
5,364 + 13511 mRNA_5143 0.37 +0.2
5,412 - 13511 mRNA_5143 0.39 -0.9
5,495 + 13511 mRNA_5143 0.42 +0.6
5,674 - 13511 mRNA_5143 0.47 +0.1
5,676 + 13511 mRNA_5143 0.48 -0.8
5,836 + 13511 mRNA_5143 0.53 +1.6
5,960 + 13511 mRNA_5143 0.57 -0.1
6,090 - 13511 mRNA_5143 0.61 -0.3
6,153 + 13511 mRNA_5143 0.63 +0.7
6,260 + 13511 mRNA_5143 0.66 +0.7
6,459 + 13511 mRNA_5143 0.73 +0.2
6,533 + 13511 mRNA_5143 0.75 -1.0
6,561 + 13511 mRNA_5143 0.76 +0.6
6,589 + 13511 mRNA_5143 0.77 +2.5
6,833 - 13511 mRNA_5143 0.85 +0.6
6,846 + 13511 mRNA_5143 0.85 -1.2
7,001 + +0.4
7,143 + +1.1
7,151 - +0.7
7,151 - +2.9
7,151 - +0.7
7,152 + -0.3
7,157 + +1.2
7,157 + +0.1
7,157 + +1.1
7,404 - -0.4
7,405 - +0.8
7,410 + +0.6
7,547 - -0.1
7,889 - +1.4
8,019 - -3.4
8,069 + +1.5
8,108 + -0.2
8,267 - 13512 mRNA_5144 0.53 +1.6

Or see this region's nucleotide sequence