Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5147

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13514 and 13515 are separated by 915 nucleotides mRNA_5146: 13514 - Hypothetical Protein, at 12,998 to 14,215 13514 mRNA_5147: 13515 - Hypothetical Protein, at 15,131 to 16,351 13515

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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14,146 + +0.9
14,309 + +0.6
14,337 - +0.8
14,340 - +0.9
14,341 + +0.1
14,348 - -0.8
14,350 + +0.4
14,357 + -0.1
14,457 - +0.7
14,459 + -0.3
14,480 - +0.9
14,494 - +0.9
14,494 - +0.3
14,495 + +0.8
14,496 + +0.8
14,504 + -0.3
14,504 + +0.7
14,504 + -0.6
14,504 + +0.1
14,508 + +1.0
14,646 + +1.4
14,709 + +1.3
14,785 + +0.3
14,794 + +1.0
15,169 + -1.1
15,184 + +1.1
15,219 + +0.9
15,244 + +0.3
15,356 + 13515 mRNA_5147 0.18 +0.7
15,381 + 13515 mRNA_5147 0.20 -3.0
15,386 + 13515 mRNA_5147 0.21 +0.7
15,677 + 13515 mRNA_5147 0.45 -0.2
15,928 - 13515 mRNA_5147 0.65 +1.3
15,938 - 13515 mRNA_5147 0.66 +0.0
16,093 + 13515 mRNA_5147 0.79 -0.6
16,099 + 13515 mRNA_5147 0.79 +2.2
16,205 + 13515 mRNA_5147 0.88 +1.0
16,231 - +0.0
16,515 - +0.7
16,520 - +0.2
16,535 + -0.6
16,621 - +0.7
16,665 + +2.2
16,687 + -0.4
16,710 + +0.9
16,716 + -0.2
16,791 + +0.7
16,949 - +0.0
16,966 - +0.1
16,973 + -0.0
16,983 + +0.7
16,985 + -0.0
16,986 + -0.1
16,988 + +2.3
16,989 - +0.3
16,992 + +1.5
16,994 - +0.5
16,997 + +0.3
17,006 + +0.3
17,026 + +0.5
17,117 - -0.3
17,123 - +0.5
17,151 + +2.0
17,284 - +0.7
17,285 + +0.3

Or see this region's nucleotide sequence