Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5156

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13523 and 13524 are separated by 812 nucleotides13524 and 13525 are separated by 420 nucleotides mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30,718 to 32,151 13523 mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32,964 to 35,897 13524 mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36,318 to 38,711 13525

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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32,279 - +0.4
32,281 - +0.6
32,367 + +0.2
32,367 + -0.9
32,371 + +1.6
32,375 + +0.4
32,377 - +0.0
32,387 - -1.6
32,387 - +2.8
32,387 - -0.4
32,387 - +2.8
32,395 + +1.5
32,395 + +0.1
32,395 + +1.1
32,395 + +0.7
32,395 + -1.9
32,503 - +1.7
32,554 + +1.4
32,562 + +0.3
32,708 + +0.4
32,710 + +1.3
32,783 + +0.9
32,809 + +0.3
32,835 + +1.2
32,859 + -1.6
32,893 - +1.1
32,898 - -1.4
33,147 - +0.5
33,182 - -0.1
33,268 - 13524 mRNA_5156 0.10 -0.0
33,285 - 13524 mRNA_5156 0.11 -0.6
33,452 - 13524 mRNA_5156 0.17 +1.2
33,461 - 13524 mRNA_5156 0.17 +0.5
33,463 - 13524 mRNA_5156 0.17 +1.1
33,482 + 13524 mRNA_5156 0.18 +1.1
33,508 + 13524 mRNA_5156 0.19 +2.5
33,613 + 13524 mRNA_5156 0.22 +2.4
33,869 + 13524 mRNA_5156 0.31 -0.2
33,885 + 13524 mRNA_5156 0.31 -0.9
34,645 - 13524 mRNA_5156 0.57 +0.6
34,665 - 13524 mRNA_5156 0.58 +1.6
34,809 - 13524 mRNA_5156 0.63 +0.5
34,960 - 13524 mRNA_5156 0.68 +0.1
34,961 - 13524 mRNA_5156 0.68 -0.3
34,998 + 13524 mRNA_5156 0.69 +2.3
35,406 - 13524 mRNA_5156 0.83 -0.2
35,499 - 13524 mRNA_5156 0.86 -0.9
35,517 + 13524 mRNA_5156 0.87 +2.3
35,667 - +1.6
35,828 - -1.2
35,836 + -0.7
35,981 - +1.2
36,100 + +0.5
36,103 - -0.9
36,108 + +1.2
36,154 - +0.7
36,161 + +0.2
36,296 + +1.4
36,535 - +1.1
36,535 - -0.2
36,579 - 13525 mRNA_5157 0.11 +0.0
36,585 + 13525 mRNA_5157 0.11 -0.3
36,662 + 13525 mRNA_5157 0.14 +0.4
36,693 + 13525 mRNA_5157 0.16 +1.0
36,834 + 13525 mRNA_5157 0.22 -1.7
36,847 + 13525 mRNA_5157 0.22 -1.6

Or see this region's nucleotide sequence