Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5191

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13558 and 13559 are separated by 549 nucleotides13559 and 13560 are separated by 121 nucleotides mRNA_5190: 13558 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 114,138 to 116,063 13558 mRNA_5191: 13559 - KOG4826 C-8,7 sterol isomerase, at 116,613 to 117,622 13559 mRNA_5192: 13560 - KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family), at 117,744 to 118,664 13560

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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116,050 + +0.9
116,371 - +1.4
116,378 - -1.1
116,531 - +1.0
116,673 - -0.7
116,814 + 13559 mRNA_5191 0.20 +0.4
116,933 - 13559 mRNA_5191 0.32 +0.1
116,985 - 13559 mRNA_5191 0.37 +1.0
117,106 + 13559 mRNA_5191 0.49 -0.8
117,132 - 13559 mRNA_5191 0.51 -0.1
117,279 + 13559 mRNA_5191 0.66 -0.3
117,688 - +1.0
117,707 - +2.2
117,709 - +0.3
117,858 - 13560 mRNA_5192 0.12 -0.5
117,859 + 13560 mRNA_5192 0.12 +0.9
118,165 + 13560 mRNA_5192 0.46 -0.0
118,169 + 13560 mRNA_5192 0.46 +0.3

Or see this region's nucleotide sequence