Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5205

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13573 and 13574 are separated by 913 nucleotides mRNA_5205: 13573 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 148,303 to 148,964 13573 mRNA_5206: 13574 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 149,878 to 151,168 13574

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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147,662 + -0.4
147,890 - +1.1
148,148 - +0.3
148,173 + +0.5
148,176 + +0.1
148,187 + -0.3
148,205 + +0.2
148,213 - +0.9
148,321 - +0.2
148,396 - 13573 mRNA_5205 0.14 +0.7
148,487 - 13573 mRNA_5205 0.28 +0.8
148,506 + 13573 mRNA_5205 0.31 +1.7
148,629 + 13573 mRNA_5205 0.49 +1.0
148,738 - 13573 mRNA_5205 0.66 +0.4
148,822 + 13573 mRNA_5205 0.78 -0.3
148,931 + +1.3
148,961 + -0.4
149,102 - +0.8
149,178 - -0.4
149,279 - +2.1
149,388 + -0.2
149,434 - -1.9
149,455 - -0.8
149,524 + +0.7
149,548 - -1.0
149,606 - -0.3
149,608 + -0.9
149,675 - +0.9
149,699 + -0.6
149,871 + +1.4

Or see this region's nucleotide sequence