Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5216

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13585 and 13584 are separated by 698 nucleotides13584 and 13586 are separated by 131 nucleotides mRNA_5217: 13585 - Hypothetical Protein, at 167,751 to 168,514 13585 mRNA_5216: 13584 - K04648 DCTN1 dynactin 1, at 169,213 to 174,465 13584 mRNA_5218: 13586 - HMMPfam-RNA12 protein-PF10443,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF54928, at 174,597 to 177,713 13586

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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168,417 - 13585 mRNA_5217 0.87 +0.6
168,429 - 13585 mRNA_5217 0.89 +1.3
168,740 + +0.3
168,816 + +1.4
168,905 - +0.9
168,909 - -0.5
169,361 + -1.7
169,364 - -1.0
169,594 - -0.7
169,627 + -0.8
172,590 + 13584 mRNA_5216 0.64 +0.0
174,502 + +0.4
174,503 - +0.5
174,517 + +1.1
174,560 - +0.6
174,565 + -0.3
174,566 + -1.2
174,577 + -0.2
174,601 - -0.1
174,700 + +0.3
174,734 - -1.2
175,148 - 13586 mRNA_5218 0.18 -1.2
175,286 + 13586 mRNA_5218 0.22 -0.5

Or see this region's nucleotide sequence