Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5278

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13645 and 13646 are separated by 274 nucleotides13646 and 13647 are separated by 411 nucleotides mRNA_5277: 13645 - Hypothetical Protein, at 340,398 to 341,217 13645 mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341,492 to 344,533 13646 mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344,945 to 347,664 13647

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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340,564 - 13645 mRNA_5277 0.20 +0.5
340,675 - 13645 mRNA_5277 0.34 +0.8
340,723 - 13645 mRNA_5277 0.40 +0.4
341,050 - 13645 mRNA_5277 0.80 +0.6
341,117 + 13645 mRNA_5277 0.88 +0.3
341,592 - -1.2
341,682 + -0.3
341,972 + 13646 mRNA_5278 0.16 -2.2
342,449 - 13646 mRNA_5278 0.31 -0.8
342,760 - 13646 mRNA_5278 0.42 -2.4
342,902 - 13646 mRNA_5278 0.46 +0.1
343,048 - 13646 mRNA_5278 0.51 +0.2
343,459 + 13646 mRNA_5278 0.65 +0.6
343,803 - 13646 mRNA_5278 0.76 +2.3
343,937 + 13646 mRNA_5278 0.80 -0.2
344,625 - +0.4
345,398 + 13647 mRNA_5279 0.17 -1.5
345,402 + 13647 mRNA_5279 0.17 +0.9
345,512 + 13647 mRNA_5279 0.21 +0.2
345,521 - 13647 mRNA_5279 0.21 -0.5

Or see this region's nucleotide sequence