Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5328

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13695 and 13696 are separated by 762 nucleotides13696 and 13697 are separated by 148 nucleotides mRNA_5327: 13695 - Hypothetical Protein, at 463,511 to 464,845 13695 mRNA_5328: 13696 - HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197, at 465,608 to 466,886 13696 mRNA_5329: 13697 - K02212 MCM4, CDC54 DNA replication licensing factor MCM4, at 467,035 to 469,864 13697

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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464,642 - 13695 mRNA_5327 0.85 -0.9
464,673 - 13695 mRNA_5327 0.87 -0.6
464,954 - +0.7
464,956 + +0.6
464,969 + +0.6
464,977 - -0.7
465,122 + +0.8
465,125 + +0.2
465,129 - +0.5
465,132 + +2.2
465,252 + -0.3
465,267 + +1.6
465,281 - +0.7
465,292 - +1.5
465,300 - +1.3
465,408 - +0.0
465,417 + -0.4
465,418 + -0.1
465,451 - +0.4
465,584 + -1.2
465,590 + -0.9
465,607 + +0.9
465,619 + +0.7
466,016 - 13696 mRNA_5328 0.32 -0.6
466,467 - 13696 mRNA_5328 0.67 -0.0
466,598 - 13696 mRNA_5328 0.77 +0.4
466,643 + 13696 mRNA_5328 0.81 +1.2
467,033 - +0.7
467,042 - -0.9
467,138 - +1.7
467,207 - -1.4
467,208 + +0.0
467,251 + +0.2
467,284 - -1.6
467,285 + -1.3
467,318 - 13697 mRNA_5329 0.10 +1.1

Or see this region's nucleotide sequence