Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5377

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5377: 13745 - Hypothetical Protein, at 587,217 to 590,101 13745

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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586,763 + +0.2
586,764 + +1.1
586,782 - +1.4
586,788 - -0.0
586,789 - -0.3
586,890 + -0.9
587,061 + +0.6
587,074 + -0.4
587,428 + -1.8
587,628 + 13745 mRNA_5377 0.14 +1.2
587,631 + 13745 mRNA_5377 0.14 +1.0
587,812 - 13745 mRNA_5377 0.21 +1.0
587,958 - 13745 mRNA_5377 0.26 +0.1
588,185 - 13745 mRNA_5377 0.34 +2.0
588,374 - 13745 mRNA_5377 0.40 +1.4
588,380 + 13745 mRNA_5377 0.40 +0.5
588,509 + 13745 mRNA_5377 0.45 +0.7
588,522 - 13745 mRNA_5377 0.45 +1.8
588,721 + 13745 mRNA_5377 0.52 -2.3
588,747 - 13745 mRNA_5377 0.53 -2.2
588,844 - 13745 mRNA_5377 0.56 +1.6
588,853 - 13745 mRNA_5377 0.57 +1.2
588,865 + 13745 mRNA_5377 0.57 +1.6
589,554 + 13745 mRNA_5377 0.81 -0.5
589,596 - 13745 mRNA_5377 0.82 +1.3
589,632 - 13745 mRNA_5377 0.84 -0.2
590,035 + +0.7
590,199 - -0.3
590,325 + -0.6
590,363 + -1.9
590,411 - -0.1
590,427 - -0.3
590,428 + +0.6
590,430 + +0.1
590,442 + -0.4
590,459 - -0.6
590,464 - -0.4
590,470 - +2.3
590,474 - -0.4
590,478 - +0.5
590,492 + +0.7
590,650 - +0.6
590,762 + +0.5
590,994 + +0.4
591,009 + -0.5
591,019 - -0.4

Or see this region's nucleotide sequence