Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5393

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5393: 13761 - KOG0603 Ribosomal protein S6 kinase, at 640,505 to 641,434 13761

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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639,654 + -0.7
639,778 - +0.1
639,809 + +0.4
639,844 - +0.7
639,889 - +0.8
639,922 + +0.2
639,964 - -0.2
640,009 - -0.2
640,092 - -0.9
640,184 + +0.3
640,231 + +0.1
640,243 - -0.6
640,251 - -0.1
640,251 + +0.5
640,379 - +1.0
640,386 + -1.0
640,390 - +0.1
640,393 - +0.1
640,611 - 13761 mRNA_5393 0.11 -0.7
640,611 - 13761 mRNA_5393 0.11 +0.3
640,620 - 13761 mRNA_5393 0.12 +2.5
640,680 - 13761 mRNA_5393 0.19 +0.5
640,820 - 13761 mRNA_5393 0.34 -0.6
640,821 - 13761 mRNA_5393 0.34 +1.1
640,839 - 13761 mRNA_5393 0.36 -0.3
640,844 - 13761 mRNA_5393 0.36 -0.9
640,884 - 13761 mRNA_5393 0.41 +1.5
640,899 + 13761 mRNA_5393 0.42 +0.8
640,933 - 13761 mRNA_5393 0.46 -0.4
640,965 - 13761 mRNA_5393 0.49 -0.1
640,980 - 13761 mRNA_5393 0.51 -0.4
640,986 + 13761 mRNA_5393 0.52 -2.0
640,996 + 13761 mRNA_5393 0.53 -0.1
641,085 - 13761 mRNA_5393 0.62 +0.6
641,090 - 13761 mRNA_5393 0.63 -0.2
641,126 - 13761 mRNA_5393 0.67 -0.1
641,147 + 13761 mRNA_5393 0.69 -0.2
641,148 - 13761 mRNA_5393 0.69 -0.2
641,169 - 13761 mRNA_5393 0.71 +0.0
641,172 - 13761 mRNA_5393 0.72 +1.8
641,172 + 13761 mRNA_5393 0.72 -0.1
641,179 + 13761 mRNA_5393 0.72 -0.0
641,179 + 13761 mRNA_5393 0.72 +0.6
641,211 - 13761 mRNA_5393 0.76 +1.0
641,218 - 13761 mRNA_5393 0.77 +2.0
641,223 - 13761 mRNA_5393 0.77 +1.1
641,231 - 13761 mRNA_5393 0.78 -0.1
641,256 - 13761 mRNA_5393 0.81 -0.3
641,276 - 13761 mRNA_5393 0.83 -0.4
641,288 - 13761 mRNA_5393 0.84 -1.6
641,288 - 13761 mRNA_5393 0.84 -0.5
641,289 - 13761 mRNA_5393 0.84 +0.0
641,289 - 13761 mRNA_5393 0.84 -1.2
641,290 - 13761 mRNA_5393 0.84 +1.1
641,299 - 13761 mRNA_5393 0.85 +0.4
641,323 - 13761 mRNA_5393 0.88 +0.6
641,374 - +0.8
641,375 - +0.2
641,378 - -0.9
641,379 - +1.0
641,384 - -0.9
641,385 - -0.0
641,409 - +0.4
641,417 - +2.1
641,418 - +0.1
641,420 + -0.5
641,422 + +0.2
641,428 + +0.4
641,428 + -1.7
641,428 + -1.1
641,428 + -0.9
641,428 + +2.2
641,429 + +0.1
641,429 - +2.1
641,430 + -0.8
641,431 + -3.7
641,431 + -0.4
641,431 + -0.3
641,431 - +1.3
641,431 - -1.1
641,432 + +1.7
641,432 + -0.7
641,432 - -0.4
641,432 + +1.0
641,433 - +0.1
641,433 - -0.6
641,433 + -0.8
641,433 + -1.0
641,434 + +1.2
641,435 + +0.0
641,435 + +0.0
641,435 + +1.0
641,436 + +0.4
641,436 + -0.1
641,436 + +4.0
641,436 + -0.1
641,436 + -1.6
641,436 + +1.3
641,436 + +0.5
641,436 + -2.3
641,437 + -1.9
641,438 + -1.8
641,439 - +3.6
641,439 - +0.2
641,440 - +1.7
641,441 - +0.1
641,442 - +0.2
641,444 - +0.1
641,445 - +0.4
641,447 - -2.2
641,454 - +0.0

Or see this region's nucleotide sequence