Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1 + -2.4
1 + +0.4
1 + +2.0
1 + -0.6
23 + -2.6
29 + +0.4
29 + +0.6
34 + -3.4
39 + +0.9
39 + +0.1
47 + +1.3
50 + -0.2
50 + -1.9
50 + -0.5
50 + +0.7
50 - -0.1
51 + +1.3
61 + +2.5
62 + -0.6
96 + +1.6
116 + +0.3
158 - -0.2
159 - -0.2
160 - +1.3
169 - +0.3
180 - +0.7
189 + -0.9
198 + -0.7
201 - +0.5
208 - -0.7
210 + +1.5
225 + 13762 mRNA_5394 0.11 -0.3
225 + 13762 mRNA_5394 0.11 +0.2
244 + 13762 mRNA_5394 0.13 -3.0
245 - 13762 mRNA_5394 0.13 +0.9
271 - 13762 mRNA_5394 0.16 +0.8
276 - 13762 mRNA_5394 0.16 -1.4
277 + 13762 mRNA_5394 0.16 -0.2
280 - 13762 mRNA_5394 0.17 -0.4
306 + 13762 mRNA_5394 0.19 +0.3
317 - 13762 mRNA_5394 0.21 -0.3
345 + 13762 mRNA_5394 0.23 -0.3
345 - 13762 mRNA_5394 0.23 -2.7
347 + 13762 mRNA_5394 0.24 +0.4
359 - 13762 mRNA_5394 0.25 -2.3
387 - 13762 mRNA_5394 0.28 +0.7
399 + 13762 mRNA_5394 0.29 +1.2
434 + 13762 mRNA_5394 0.33 +1.2
447 - 13762 mRNA_5394 0.34 +0.7
485 - 13762 mRNA_5394 0.38 +0.2
543 + 13762 mRNA_5394 0.44 -0.1
649 + 13762 mRNA_5394 0.55 +1.5
667 + 13762 mRNA_5394 0.57 -1.5
667 - 13762 mRNA_5394 0.57 +1.8
678 - 13762 mRNA_5394 0.58 -0.8
718 + 13762 mRNA_5394 0.63 -1.4
723 + 13762 mRNA_5394 0.63 +1.9
802 + 13762 mRNA_5394 0.71 +0.5
806 + 13762 mRNA_5394 0.72 +0.4
905 - 13762 mRNA_5394 0.82 -0.2
911 + 13762 mRNA_5394 0.83 +2.3
965 + 13762 mRNA_5394 0.88 +0.0
966 + 13762 mRNA_5394 0.89 +1.5
968 + 13762 mRNA_5394 0.89 -0.4
1,014 - +0.3
1,084 - -1.4
1,103 - +0.3
1,110 + +0.5
1,245 - 13763 mRNA_5395 0.11 -2.9
1,260 - 13763 mRNA_5395 0.13 +0.1
1,376 - 13763 mRNA_5395 0.27 +0.0
1,438 + 13763 mRNA_5395 0.34 -0.8
1,438 + 13763 mRNA_5395 0.34 +1.2
1,438 + 13763 mRNA_5395 0.34 +0.2
1,523 + 13763 mRNA_5395 0.44 +0.4
1,528 - 13763 mRNA_5395 0.45 +0.7
1,533 + 13763 mRNA_5395 0.45 +0.8
1,538 + 13763 mRNA_5395 0.46 -1.3
1,538 - 13763 mRNA_5395 0.46 +0.0
1,556 + 13763 mRNA_5395 0.48 -1.5
1,639 + 13763 mRNA_5395 0.58 +0.8
1,854 - 13763 mRNA_5395 0.83 +1.8
1,855 - 13763 mRNA_5395 0.83 +1.0
1,887 - 13763 mRNA_5395 0.87 -0.3
1,908 - 13763 mRNA_5395 0.89 -1.0
2,000 - -0.9
2,009 + +1.3

Or see this region's nucleotide sequence