Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5505

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13872 and 13873 are separated by 355 nucleotides mRNA_5504: 13872 - KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU), at 253,512 to 254,101 13872 mRNA_5505: 13873 - KOG0297 TNF receptor-associated factor, at 254,457 to 255,755 13873

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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253,457 + +0.4
254,147 + -1.1
254,163 + -0.1
254,176 - -1.5
254,401 + -0.3
254,645 - 13873 mRNA_5505 0.14 +2.0
254,646 + 13873 mRNA_5505 0.15 +0.2
254,755 - 13873 mRNA_5505 0.23 -1.2
254,894 - 13873 mRNA_5505 0.34 +0.6
254,896 - 13873 mRNA_5505 0.34 -0.2
255,024 - 13873 mRNA_5505 0.44 -0.0
255,036 - 13873 mRNA_5505 0.45 +0.9
255,251 + 13873 mRNA_5505 0.61 +2.0
255,642 + +2.3
255,658 + -0.1
255,918 - +0.9
256,070 - +1.9
256,090 + +2.0
256,098 - +0.1
256,117 + +0.5
256,212 - -0.5
256,222 - +0.5
256,236 - +0.1
256,360 + +0.5
256,530 + +0.5

Or see this region's nucleotide sequence