Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5508

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13876 and 13877 are separated by 456 nucleotides mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262,441 to 263,588 13876 mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264,045 to 264,907 13877

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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261,517 - +0.3
261,525 + -0.4
261,546 + -0.5
261,564 + +0.2
261,653 - +1.0
261,828 - +0.0
262,128 - -0.9
262,548 + -2.1
262,710 - 13876 mRNA_5508 0.23 +0.8
262,723 + 13876 mRNA_5508 0.25 +0.6
262,806 + 13876 mRNA_5508 0.32 +2.4
262,895 - 13876 mRNA_5508 0.40 +0.5
263,365 - 13876 mRNA_5508 0.80 -0.9
263,445 - 13876 mRNA_5508 0.87 +0.4
263,578 - +1.3
263,579 + +0.6
263,582 - +0.4
263,689 - +0.1
263,708 - -0.3
263,718 - +0.5
263,727 - +1.6
263,732 + -0.7
263,732 + +1.1
263,736 - +0.2
263,749 + -0.6
263,844 + -1.1
263,878 + +2.2
264,436 - 13877 mRNA_5509 0.45 -1.3
264,473 + 13877 mRNA_5509 0.50 +0.1

Or see this region's nucleotide sequence