Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5548

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13915 and 13916 are separated by 437 nucleotides13916 and 13917 are separated by 804 nucleotides mRNA_5547: 13915 - K08994 yneE putative membrane protein, at 344,428 to 346,193 13915 mRNA_5548: 13916 - KOG4006 Anti-proliferation factor BTG1/TOB, at 346,631 to 348,391 13916 mRNA_5549: 13917 - K00027 ME2, sfcA, maeA malate dehydrogenase (oxaloacetate-decarboxylating), at 349,196 to 351,953 13917

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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345,869 + 13915 mRNA_5547 0.82 +1.4
345,924 - 13915 mRNA_5547 0.85 -0.3
346,758 + +1.9
346,759 + -2.2
346,872 + 13916 mRNA_5548 0.14 +1.3
348,259 + +0.4
348,390 + +0.1
348,436 + +0.7
348,561 - +2.1
348,592 + -0.1
348,705 - +0.4
348,713 - -2.3
348,723 + -0.3
348,727 + -0.0
348,727 + +1.6
348,730 + +0.8
348,730 - +0.2
348,730 + +1.9
348,733 - +1.8
348,735 - +0.4
348,739 - +0.4
348,875 - -0.2
348,877 - +1.6
348,896 - +1.2
349,034 - -0.4
349,045 - -0.3
349,148 + -1.4
349,164 + +0.3
349,171 + +1.4
349,177 - +0.7
349,186 + +1.7
349,309 - -0.6
349,320 + -0.2

Or see this region's nucleotide sequence