Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5578

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13945 and 13946 are separated by 396 nucleotides mRNA_5577: 13945 - Hypothetical Protein, at 418,154 to 419,235 13945 mRNA_5578: 13946 - HMMPfam-HMG (high mobility group) box-PF00505,ProSiteProfiles-HMG boxes A and B DNA-binding domains profile.-PS50118,SMART-high mobility group-SM00398,SUPERFAMILY--SSF47095, at 419,632 to 421,061 13946

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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418,835 - 13945 mRNA_5577 0.63 +0.6
418,836 - 13945 mRNA_5577 0.63 +0.8
418,967 - 13945 mRNA_5577 0.75 +2.8
419,001 - 13945 mRNA_5577 0.78 +0.7
419,140 - +0.7
419,140 - +0.7
419,258 - +0.3
419,273 + -0.6
419,404 - +0.4
419,415 + +0.3
419,416 + -1.6
419,420 - +1.2
419,435 + +0.1
419,437 + +2.5
419,449 - -0.6
419,519 - +0.9
419,542 - +1.0
419,542 - +0.7
419,548 - +0.9
419,549 + +1.5
419,550 + +1.2
419,555 - +0.3
419,558 + +0.9
419,558 + +0.3
419,559 - +1.7
419,561 + +2.9
419,565 + +0.9
419,568 + +0.6
419,568 + -0.3
419,570 - +0.5
419,571 - +2.0
419,572 - -3.7
419,572 + +0.8
419,575 - -1.0
419,581 + +0.5
419,588 + -0.3
419,590 + +0.1
419,590 - +0.2
419,591 + +0.2
419,595 + +0.1
419,596 + +1.3
419,605 + +0.5
421,206 - -0.2
421,329 + +1.6
421,353 - +0.6
421,468 - +1.5
421,473 + -0.5
421,483 - +0.1
421,484 - +1.3
421,486 - +2.1
421,489 - +0.4
421,489 + +0.5
421,503 + -0.6
421,508 + -0.7
421,523 - +1.9
421,525 - +1.0
421,530 + +1.4
421,530 + +0.5
421,636 + +1.5
421,663 - +0.3
421,822 - +1.1
421,826 + -0.2
421,834 + -0.5
421,845 + -1.3

Or see this region's nucleotide sequence