Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5647

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14014 and 14015 are separated by 514 nucleotides14015 and 14016 are separated by 186 nucleotides mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586,465 to 587,964 14014 mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588,479 to 592,654 14015 mRNA_5648: 14016 - K11268 ESCO, ECO1 N-acetyltransferase, at 592,841 to 594,405 14016

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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587,808 + 14014 mRNA_5646 0.90 -0.7
587,882 - +1.5
587,908 + -0.3
587,931 - +0.5
588,054 + -0.2
588,057 - +0.2
588,057 - +0.1
588,058 + +1.4
588,101 + +1.6
588,106 + +0.6
588,107 + +0.5
588,121 + +2.0
588,213 + -0.1
588,250 + +0.8
588,548 - -1.1
588,661 - +1.4
588,804 - +0.2
588,824 + -0.6
589,984 + 14015 mRNA_5647 0.36 +0.6
590,019 - 14015 mRNA_5647 0.37 -0.1
590,536 - 14015 mRNA_5647 0.49 -0.6
590,577 - 14015 mRNA_5647 0.50 -0.4
590,652 - 14015 mRNA_5647 0.52 -1.1
590,880 - 14015 mRNA_5647 0.57 -0.2
591,744 - 14015 mRNA_5647 0.78 -0.2
592,210 - 14015 mRNA_5647 0.89 -0.5
592,299 - +1.0
592,319 - +0.5
592,394 - +2.1
592,445 - -2.2
592,549 - -1.5
592,693 - +0.2
592,723 + -0.4
592,771 + +1.5
593,125 + 14016 mRNA_5648 0.18 +0.6
593,637 + 14016 mRNA_5648 0.51 -0.1

Or see this region's nucleotide sequence