Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5672

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14039 and 14040 are separated by 163 nucleotides14040 and 14041 are separated by 777 nucleotides mRNA_5671: 14039 - K11675 IES1 Ino eighty subunit 1, at 659,400 to 661,417 14039 mRNA_5672: 14040 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 661,581 to 662,502 14040 mRNA_5673: 14041 - Hypothetical Protein, at 663,280 to 665,489 14041

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
660,774 + 14039 mRNA_5671 0.68 -2.2
660,786 - 14039 mRNA_5671 0.69 +1.5
660,951 - 14039 mRNA_5671 0.77 +0.7
660,965 + 14039 mRNA_5671 0.78 +0.1
661,106 - 14039 mRNA_5671 0.85 +2.0
661,131 + 14039 mRNA_5671 0.86 +0.2
661,490 - +1.0
661,527 - -0.9
661,667 - +1.0
662,201 - 14040 mRNA_5672 0.67 +0.5
662,521 - +0.3
662,725 + +0.1
662,809 + -0.1
662,823 + -1.7
662,827 + +0.1
662,848 - +1.2
662,854 + -0.8
662,894 - -0.4
662,920 + +0.3
662,922 - +2.3
662,928 + +0.6
662,944 - -1.1
662,991 + -0.4
662,992 - -0.6
662,998 + -0.3
663,005 + -0.1
663,007 + -0.3
663,008 + -0.1
663,011 + -1.2
663,016 + -0.4
663,021 - +0.3
663,067 + +2.2
663,073 + -0.7
663,183 + -0.2
663,330 + -0.3

Or see this region's nucleotide sequence