Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5697

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14064 and 14065 are separated by 296 nucleotides14065 and 14066 are separated by 811 nucleotides mRNA_5696: 14064 - K07152 SCO1_2 protein SCO1/2, at 710,565 to 711,827 14064 mRNA_5697: 14065 - K14568 EMG1, NEP1 rRNA small subunit pseudouridine methyltransferase Nep1, at 712,124 to 713,421 14065 mRNA_5698: 14066 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 714,233 to 715,636 14066

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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711,766 + +0.1
711,900 + +2.3
711,904 + +0.1
711,905 - +0.5
711,920 + +1.6
711,941 - -0.9
713,433 + -0.1
713,539 + +0.5
713,702 - +0.3
713,823 - +1.5
713,825 - -1.0
713,838 + -0.0
713,998 + +0.4
714,007 - -0.1
714,013 + +0.8
714,016 - +0.4
714,016 - -3.4
714,017 + -0.1
714,195 + +0.2

Or see this region's nucleotide sequence