Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5823

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14190 and 14191 are separated by 469 nucleotides14191 and 14192 are separated by 924 nucleotides mRNA_5822: 14190 - SUPERFAMILY--SSF52047, at 1,025,817 to 1,027,407 14190 mRNA_5823: 14191 - SUPERFAMILY--SSF52047, at 1,027,877 to 1,028,999 14191 mRNA_5824: 14192 - Hypothetical Protein, at 1,029,924 to 1,031,060 14192

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,026,890 + 14190 mRNA_5822 0.67 +0.6
1,027,051 + 14190 mRNA_5822 0.78 +0.7
1,027,203 + 14190 mRNA_5822 0.87 -0.3
1,027,301 - +0.5
1,027,347 + +0.5
1,027,476 + +1.3
1,027,492 + +1.2
1,027,612 - -0.1
1,027,615 - +0.4
1,027,665 - -0.2
1,027,789 - +0.4
1,028,066 - 14191 mRNA_5823 0.17 +0.8
1,028,097 + 14191 mRNA_5823 0.20 +1.5
1,028,099 + 14191 mRNA_5823 0.20 +1.6
1,028,392 + 14191 mRNA_5823 0.46 -1.1
1,028,440 - 14191 mRNA_5823 0.50 +1.1
1,028,550 - 14191 mRNA_5823 0.60 -1.7
1,028,661 - 14191 mRNA_5823 0.70 +2.3
1,028,838 - 14191 mRNA_5823 0.86 -0.8
1,029,106 + -0.0
1,029,117 - +0.1
1,029,159 - +0.2
1,029,294 + +1.2
1,029,405 + -0.2
1,029,425 + +0.1
1,029,438 + -0.2
1,029,459 - -1.3
1,029,464 + -0.2
1,029,486 + +2.1
1,029,548 + -0.3
1,029,568 - +0.1
1,029,738 + +0.1
1,029,749 + -1.0
1,029,756 + +0.8
1,029,782 + -2.2
1,029,786 + +0.5
1,029,876 - -0.3

Or see this region's nucleotide sequence