Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5836

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14202 and 14204 are separated by 544 nucleotides14204 and 14203 are separated by 119 nucleotides mRNA_5834: 14202 - HMMPfam-Protein of unknown function (DUF1688)-PF07958, at 1,048,946 to 1,050,486 14202 mRNA_5836: 14204 - Hypothetical Protein, at 1,051,031 to 1,051,324 14204 mRNA_5835: 14203 - Hypothetical Protein, at 1,051,444 to 1,053,111 14203

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,050,115 - 14202 mRNA_5834 0.76 +1.0
1,050,194 - 14202 mRNA_5834 0.81 +0.0
1,050,197 + 14202 mRNA_5834 0.81 -0.1
1,050,429 + +1.7
1,050,472 + +2.5
1,050,499 + +0.7
1,050,793 + +0.4
1,050,802 + -0.5
1,050,927 + +0.6
1,050,960 - +1.2
1,050,971 + +1.7
1,050,971 + -0.2
1,050,971 + -0.9
1,050,972 - -0.0
1,050,989 + +1.3
1,051,248 - 14204 mRNA_5836 0.74 +0.7
1,051,253 - 14204 mRNA_5836 0.76 -0.6
1,051,570 + +0.0
1,051,811 + 14203 mRNA_5835 0.22 +0.3
1,052,280 + 14203 mRNA_5835 0.50 +0.3

Or see this region's nucleotide sequence