Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5859

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14226 and 14227 are separated by 424 nucleotides14227 and 14228 are separated by 213 nucleotides mRNA_5858: 14226 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SUPERFAMILY--SSF57959, at 1,102,268 to 1,103,746 14226 mRNA_5859: 14227 - BLAST probable atp-binding cassette transporter [Ceraceosor..., at 1,104,171 to 1,104,734 14227 mRNA_5860: 14228 - K19770 RNASEK ribonuclease kappa, at 1,104,948 to 1,105,402 14228

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,103,294 - 14226 mRNA_5858 0.69 -0.4
1,103,297 - 14226 mRNA_5858 0.70 +0.6
1,103,323 + 14226 mRNA_5858 0.71 +0.7
1,103,374 + 14226 mRNA_5858 0.75 +1.6
1,103,622 + +0.9
1,103,641 - +0.6
1,103,713 - +1.5
1,103,719 - +0.7
1,103,728 + -1.3
1,103,763 + -0.3
1,103,796 + +0.3
1,103,807 - -1.4
1,103,861 - +0.1
1,103,875 - -0.4
1,103,882 + +1.1
1,103,891 + +0.8
1,103,891 + -0.1
1,103,918 + +0.5
1,103,926 + +1.5
1,103,930 + +0.3
1,103,931 + +0.7
1,104,003 - +0.4
1,104,941 - -0.0
1,104,944 + +0.7
1,105,054 - 14228 mRNA_5860 0.23 +0.2
1,105,092 + 14228 mRNA_5860 0.32 -0.4
1,105,254 + 14228 mRNA_5860 0.67 +1.3
1,105,380 - +0.3
1,105,384 + -0.7
1,105,389 - +0.5
1,105,513 - +0.3

Or see this region's nucleotide sequence