Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5875

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14242 and 14243 are separated by 202 nucleotides mRNA_5874: 14242 - K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, at 1,138,140 to 1,139,450 14242 mRNA_5875: 14243 - Hypothetical Protein, at 1,139,653 to 1,140,264 14243

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,139,104 + 14242 mRNA_5874 0.74 +1.9
1,139,250 + 14242 mRNA_5874 0.85 +0.5
1,139,408 - -0.1
1,139,530 - +0.3
1,139,534 + -0.4
1,139,544 - -0.1
1,139,544 + +0.2
1,139,554 + +1.5
1,139,582 - -1.4
1,139,640 - +0.6
1,139,679 - +0.3
1,139,718 + 14243 mRNA_5875 0.11 +0.6
1,139,719 - 14243 mRNA_5875 0.11 -0.7
1,139,723 + 14243 mRNA_5875 0.11 +1.2
1,139,724 + 14243 mRNA_5875 0.12 -0.3
1,139,726 - 14243 mRNA_5875 0.12 +0.4
1,139,754 + 14243 mRNA_5875 0.17 +0.6
1,139,845 + 14243 mRNA_5875 0.31 +0.1
1,139,860 - 14243 mRNA_5875 0.34 +1.1
1,139,863 - 14243 mRNA_5875 0.34 +1.8
1,139,867 - 14243 mRNA_5875 0.35 +1.3
1,139,868 - 14243 mRNA_5875 0.35 +1.3
1,139,873 + 14243 mRNA_5875 0.36 +0.7
1,139,994 + 14243 mRNA_5875 0.56 +2.8
1,140,013 + 14243 mRNA_5875 0.59 +1.8
1,140,014 - 14243 mRNA_5875 0.59 +1.3
1,140,018 - 14243 mRNA_5875 0.60 +1.1
1,140,018 + 14243 mRNA_5875 0.60 -0.7
1,140,022 - 14243 mRNA_5875 0.60 +0.4
1,140,022 + 14243 mRNA_5875 0.60 +1.0
1,140,023 - 14243 mRNA_5875 0.60 -2.0
1,140,035 - 14243 mRNA_5875 0.62 -0.4
1,140,046 + 14243 mRNA_5875 0.64 -0.6
1,140,049 + 14243 mRNA_5875 0.65 -0.1
1,140,140 - 14243 mRNA_5875 0.80 -0.0
1,140,144 + 14243 mRNA_5875 0.80 -0.1
1,140,170 + 14243 mRNA_5875 0.84 +1.0
1,140,178 - 14243 mRNA_5875 0.86 -0.0
1,140,178 - 14243 mRNA_5875 0.86 +0.2
1,140,182 + 14243 mRNA_5875 0.86 -0.1
1,140,191 - 14243 mRNA_5875 0.88 +0.1
1,140,196 + 14243 mRNA_5875 0.89 +1.3
1,140,196 + 14243 mRNA_5875 0.89 -1.5
1,140,198 - 14243 mRNA_5875 0.89 -0.1
1,140,199 + 14243 mRNA_5875 0.89 -0.3
1,140,201 - 14243 mRNA_5875 0.90 +0.2
1,140,205 + +0.4
1,140,206 - +0.0
1,140,207 + -0.1
1,140,209 + +1.1
1,140,209 + +0.4
1,140,221 - +0.6
1,140,224 - +1.4
1,140,227 - +2.4
1,140,361 + -1.3
1,140,392 + -0.1
1,140,443 - -0.1
1,140,462 - +1.8
1,140,487 + +2.0
1,140,489 + +0.8
1,140,490 - +0.6
1,140,491 + -0.1
1,140,496 + +0.3
1,140,497 - +1.2
1,140,507 + +2.0
1,140,508 + +2.8
1,140,516 - +0.8
1,140,519 + +0.6
1,140,521 + -0.6
1,140,526 + +0.3
1,140,558 - -1.3
1,140,565 - +1.9
1,140,565 + +0.9
1,140,566 - -0.1
1,140,573 + +0.0
1,140,573 + -1.2
1,140,576 - +1.9
1,140,578 - -1.3
1,140,585 - +0.5
1,140,586 - -0.8
1,140,586 + +0.3
1,140,589 - -0.3
1,140,589 - +0.1
1,140,593 + -1.3
1,140,595 - +1.3
1,140,599 - +1.4
1,140,611 + +0.7
1,140,630 - -0.9
1,140,648 - +0.5
1,140,653 + +0.6
1,140,655 + -1.3
1,140,660 + +0.7
1,140,687 + -1.0
1,140,690 + +0.4
1,140,898 + -1.9
1,141,075 + +0.7
1,141,077 - -1.1
1,141,112 - +0.5
1,141,112 - +2.4
1,141,118 - +0.8
1,141,118 - +0.3
1,141,130 - +1.5
1,141,130 - +0.0
1,141,139 - +0.6
1,141,140 - +0.7

Or see this region's nucleotide sequence