Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5932

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14299 and 14300 are separated by 851 nucleotides mRNA_5931: 14299 - SUPERFAMILY--SSF51695, at 1,261,910 to 1,263,239 14299 mRNA_5932: 14300 - Hypothetical Protein, at 1,264,091 to 1,265,765 14300

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
1,263,268 - -0.4
1,263,268 - -2.6
1,263,382 - +0.8
1,263,421 - +0.6
1,263,432 + -1.4
1,263,439 - -0.8
1,263,440 + -1.8
1,263,441 - -1.0
1,263,449 - -0.5
1,263,451 + -0.8
1,263,453 - -1.9
1,263,461 + +0.1
1,263,464 + -0.7
1,263,474 + +1.6
1,263,484 + +0.2
1,263,486 + +1.0
1,263,490 + +0.2
1,263,500 - +0.1
1,263,506 + +0.1
1,263,507 + -0.6
1,263,510 + -0.2
1,263,513 - -0.2
1,263,555 - +0.3
1,263,570 - +0.4
1,263,577 + +0.7
1,263,580 + +0.8
1,263,588 + -0.1
1,263,590 + +0.6
1,263,602 + +0.4
1,263,618 - +0.8
1,263,623 - -0.3
1,263,705 - +1.3
1,263,728 + +0.1
1,263,756 + -0.3
1,263,781 + +0.5
1,263,829 + -0.2
1,263,835 + -0.2
1,263,891 - +0.1
1,264,008 + +1.7
1,264,049 + -1.3
1,264,491 - 14300 mRNA_5932 0.24 +0.5
1,264,509 + 14300 mRNA_5932 0.25 +0.7
1,264,524 + 14300 mRNA_5932 0.26 -0.8
1,264,613 + 14300 mRNA_5932 0.31 -0.9
1,264,653 - 14300 mRNA_5932 0.34 +1.0
1,264,771 - 14300 mRNA_5932 0.41 +0.6
1,265,018 + 14300 mRNA_5932 0.55 +2.0
1,265,281 - 14300 mRNA_5932 0.71 +0.6
1,265,334 - 14300 mRNA_5932 0.74 -1.0
1,265,395 + 14300 mRNA_5932 0.78 +3.0
1,265,608 + +2.3
1,265,642 - +1.3
1,265,660 - +1.4
1,265,660 + -0.3
1,265,680 - -0.2
1,265,727 + -0.1
1,265,759 - +0.0
1,265,773 - +0.4
1,265,798 - +1.2
1,265,799 + -0.4
1,265,801 + -0.3
1,265,812 - +0.3
1,265,822 + +2.5
1,265,822 + +0.6
1,265,838 + +1.0
1,265,850 + +2.2
1,265,850 - -0.3
1,265,877 - +0.8
1,265,892 - +0.1
1,265,898 - +2.0
1,265,911 + -0.0
1,265,924 - +0.5
1,265,926 + -0.5
1,265,928 + +0.5
1,265,929 + +1.2
1,265,932 + +1.2
1,265,933 - +2.3
1,265,937 + -2.8
1,265,947 - +0.3
1,265,951 - -0.9
1,265,958 - -0.6
1,265,970 + -0.4
1,265,970 + -0.3
1,265,971 - -1.2
1,265,979 - -1.3
1,265,980 - +0.1
1,266,002 - -0.3
1,266,072 + +2.0
1,266,075 - +0.3
1,266,075 - +2.2
1,266,076 + -0.8
1,266,080 + -1.8
1,266,088 - +0.0
1,266,092 - +1.3
1,266,095 + +1.2
1,266,097 + -2.2
1,266,106 + -0.1
1,266,108 - -0.8
1,266,116 + +1.4
1,266,120 - -0.2
1,266,132 + -0.8
1,266,137 - +1.5
1,266,149 - +0.5
1,266,151 + -1.0
1,266,171 - +1.6
1,266,178 + +2.2
1,266,180 - +0.7
1,266,185 + +0.7
1,266,190 + -0.1
1,266,193 - +0.1
1,266,197 + -0.4
1,266,200 - +1.1
1,266,204 + +2.6
1,266,206 + +0.9
1,266,214 - -1.4
1,266,217 - +0.5
1,266,218 - +0.5
1,266,234 - -0.8
1,266,239 - +0.1
1,266,240 + +1.1
1,266,247 + +1.1
1,266,255 - -0.7
1,266,271 - -0.0
1,266,272 - +0.3
1,266,274 + -0.4
1,266,279 + +0.7
1,266,283 + -0.8
1,266,287 + +1.4
1,266,289 - +0.2
1,266,289 - -0.0
1,266,291 - -0.7
1,266,295 + -0.6
1,266,298 + -0.4
1,266,303 - +0.3
1,266,309 + -0.5
1,266,314 - +0.4
1,266,320 - +0.1
1,266,324 + +1.2
1,266,327 - +1.6
1,266,328 + -0.7
1,266,332 - +0.1
1,266,337 - +0.8
1,266,343 + -0.8
1,266,344 - +1.4
1,266,346 + +1.2
1,266,357 - +0.5
1,266,362 - +0.9
1,266,370 - +0.8
1,266,389 + +0.0
1,266,396 + +0.0
1,266,425 - +0.4
1,266,427 + +1.8
1,266,433 - +0.4
1,266,434 + +0.1
1,266,437 + -0.5
1,266,441 - +0.9
1,266,442 - +0.7
1,266,442 + +1.0
1,266,443 + +0.2
1,266,460 - -0.8
1,266,460 - -0.2
1,266,463 + -0.1
1,266,479 + -0.8
1,266,480 + +0.3
1,266,483 - +2.0
1,266,485 - +0.2
1,266,492 + +0.1
1,266,500 + +0.3
1,266,521 - +0.2
1,266,524 - -1.8
1,266,572 - -0.8
1,266,579 + -0.0
1,266,588 + -2.1
1,266,598 + +0.2
1,266,599 + +0.1
1,266,617 + +2.0
1,266,624 - -0.6
1,266,634 + +1.3
1,266,646 - +0.8
1,266,650 - -0.9
1,266,663 + +0.6
1,266,673 - -1.0
1,266,677 - +1.1
1,266,697 + -0.1

Or see this region's nucleotide sequence