Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5934

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14301 and 14302 are separated by 213 nucleotides14302 and 14303 are separated by 334 nucleotides mRNA_5933: 14301 - SUPERFAMILY--SSF51126, at 1,266,869 to 1,268,786 14301 mRNA_5934: 14302 - HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506, at 1,269,000 to 1,270,285 14302 mRNA_5935: 14303 - HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689, at 1,270,620 to 1,271,852 14303

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,269,148 + 14302 mRNA_5934 0.12 +1.2
1,269,541 - 14302 mRNA_5934 0.42 +1.2
1,269,723 - 14302 mRNA_5934 0.56 +0.9
1,269,783 + 14302 mRNA_5934 0.61 +0.3
1,270,024 - 14302 mRNA_5934 0.80 +1.4
1,270,157 - -0.3
1,270,171 - +0.4
1,270,173 + -0.5
1,270,312 - +1.1
1,270,327 - +1.2
1,270,344 + -0.9
1,270,386 + +2.1
1,270,448 + -0.0
1,270,461 + -1.4
1,270,467 - +0.2
1,270,486 + -1.1
1,270,497 + -0.9
1,270,669 + +0.5
1,270,787 - 14303 mRNA_5935 0.14 -0.5
1,270,916 - 14303 mRNA_5935 0.24 +0.2

Or see this region's nucleotide sequence