Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6024

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14391 and 14392 are separated by 288 nucleotides14392 and 14393 are separated by 211 nucleotides mRNA_6023: 14391 - K03293 TC.AAT amino acid transporter, AAT family, at 1,470,254 to 1,472,430 14391 mRNA_6024: 14392 - Hypothetical Protein, at 1,472,719 to 1,473,425 14392 mRNA_6025: 14393 - KOG0324 Uncharacterized conserved protein, at 1,473,637 to 1,475,874 14393

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,472,077 - 14391 mRNA_6023 0.84 +0.1
1,472,234 + +2.3
1,472,624 + +0.9
1,472,626 - +0.5
1,472,629 + -0.6
1,472,732 + -0.8
1,472,800 - 14392 mRNA_6024 0.11 -0.4
1,472,819 + 14392 mRNA_6024 0.14 +0.4
1,472,926 + 14392 mRNA_6024 0.29 +0.5
1,472,946 + 14392 mRNA_6024 0.32 +2.0
1,472,951 + 14392 mRNA_6024 0.33 +1.1
1,472,967 + 14392 mRNA_6024 0.35 -1.0
1,473,454 + +0.2
1,473,467 + +0.1
1,473,849 + +1.1
1,474,101 + 14393 mRNA_6025 0.21 +0.6
1,474,249 - 14393 mRNA_6025 0.27 +1.4

Or see this region's nucleotide sequence