Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6038

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14405 and 14406 are separated by 550 nucleotides14406 and 14407 are separated by 320 nucleotides mRNA_6037: 14405 - SUPERFAMILY--SSF52047, at 1,495,586 to 1,496,740 14405 mRNA_6038: 14406 - Hypothetical Protein, at 1,497,291 to 1,498,658 14406 mRNA_6039: 14407 - Interpro F-box-like, at 1,498,979 to 1,500,418 14407

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
1,496,322 - 14405 mRNA_6037 0.64 +1.6
1,496,433 - 14405 mRNA_6037 0.73 +1.9
1,496,533 + 14405 mRNA_6037 0.82 +1.5
1,496,594 - 14405 mRNA_6037 0.87 -1.3
1,496,667 - -0.0
1,497,179 + -0.1
1,497,283 - +0.5
1,497,314 + +0.5
1,497,331 - +1.2
1,497,457 - 14406 mRNA_6038 0.12 +0.1
1,497,460 - 14406 mRNA_6038 0.12 +1.4
1,497,703 - 14406 mRNA_6038 0.30 +2.2
1,497,908 - 14406 mRNA_6038 0.45 +0.2
1,498,018 + 14406 mRNA_6038 0.53 +1.5
1,498,023 - 14406 mRNA_6038 0.54 -1.9
1,498,068 + 14406 mRNA_6038 0.57 -0.5
1,498,163 + 14406 mRNA_6038 0.64 +0.8
1,498,190 + 14406 mRNA_6038 0.66 -0.7
1,498,194 - 14406 mRNA_6038 0.66 +0.3
1,498,304 - 14406 mRNA_6038 0.74 +1.3
1,498,561 + -0.2
1,498,569 - -0.7
1,498,579 - +0.2
1,498,614 - -1.2
1,498,661 + +0.7
1,498,757 - +0.9
1,498,782 + +1.2
1,498,785 - +1.8
1,498,881 + +0.0
1,498,962 + -0.5
1,499,007 - -1.2
1,499,200 + 14407 mRNA_6039 0.15 -0.2
1,499,211 - 14407 mRNA_6039 0.16 -0.3
1,499,219 - 14407 mRNA_6039 0.17 +0.3
1,499,240 + 14407 mRNA_6039 0.18 +0.7
1,499,325 + 14407 mRNA_6039 0.24 -0.2
1,499,376 - 14407 mRNA_6039 0.28 +0.3
1,499,424 + 14407 mRNA_6039 0.31 -0.5
1,499,478 - 14407 mRNA_6039 0.35 +2.4
1,499,514 + 14407 mRNA_6039 0.37 +0.0
1,499,573 - 14407 mRNA_6039 0.41 +1.1

Or see this region's nucleotide sequence