Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6047

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14414 and 14415 are separated by 322 nucleotides14415 and 14416 are separated by 287 nucleotides mRNA_6046: 14414 - Hypothetical Protein, at 1,513,700 to 1,515,000 14414 mRNA_6047: 14415 - K17268 COPE coatomer subunit epsilon, at 1,515,323 to 1,516,944 14415 mRNA_6048: 14416 - Interpro WSTF, HB1, Itc1p, MBD9 motif 1, at 1,517,232 to 1,519,356 14416

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,514,380 + 14414 mRNA_6046 0.52 +1.4
1,514,384 + 14414 mRNA_6046 0.53 +2.1
1,514,384 - 14414 mRNA_6046 0.53 +0.5
1,514,537 + 14414 mRNA_6046 0.64 -0.6
1,514,798 - 14414 mRNA_6046 0.84 +3.0
1,514,800 - 14414 mRNA_6046 0.85 -1.9
1,514,803 - 14414 mRNA_6046 0.85 -0.5
1,514,822 + 14414 mRNA_6046 0.86 -1.5
1,514,926 - +2.0
1,515,235 + -0.5
1,515,393 - -0.2
1,515,874 + 14415 mRNA_6047 0.34 +0.1
1,516,432 + 14415 mRNA_6047 0.68 -0.6
1,516,851 + -0.8
1,517,156 - +1.7
1,517,157 - +0.1
1,517,164 - -1.8
1,517,306 + +1.7
1,517,362 + +0.8
1,517,431 + +0.1
1,517,472 - 14416 mRNA_6048 0.11 -2.6
1,517,474 + 14416 mRNA_6048 0.11 +0.7
1,517,585 - 14416 mRNA_6048 0.17 +1.3
1,517,598 + 14416 mRNA_6048 0.17 -0.3
1,517,627 + 14416 mRNA_6048 0.19 +0.8
1,517,627 - 14416 mRNA_6048 0.19 +1.4
1,517,627 + 14416 mRNA_6048 0.19 +0.9
1,517,631 + 14416 mRNA_6048 0.19 +0.9
1,517,647 - 14416 mRNA_6048 0.20 -1.1
1,517,654 + 14416 mRNA_6048 0.20 -0.3

Or see this region's nucleotide sequence