Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6059

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14426 and 14427 are separated by 816 nucleotides14427 and 14428 are separated by 474 nucleotides mRNA_6058: 14426 - SUPERFAMILY--SSF52047, at 1,541,089 to 1,542,626 14426 mRNA_6059: 14427 - SUPERFAMILY--SSF52047, at 1,543,443 to 1,544,992 14427 mRNA_6060: 14428 - K14806 DDX31, DBP7 ATP-dependent RNA helicase DDX31/DBP7, at 1,545,467 to 1,548,419 14428

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,542,519 + -1.6
1,542,525 - +2.3
1,542,667 - +0.7
1,542,811 - +1.6
1,542,812 + -0.4
1,542,950 + +1.3
1,542,985 + -1.6
1,542,991 + +1.0
1,543,117 - +1.6
1,543,134 + +0.9
1,543,229 + +0.9
1,543,230 - +2.0
1,543,291 + -0.3
1,543,478 + +0.4
1,543,569 - +1.4
1,543,689 - 14427 mRNA_6059 0.16 +0.8
1,543,741 - 14427 mRNA_6059 0.19 +1.7
1,543,834 + 14427 mRNA_6059 0.25 +0.8
1,543,943 - 14427 mRNA_6059 0.32 +0.2
1,544,001 - 14427 mRNA_6059 0.36 -0.1
1,544,084 - 14427 mRNA_6059 0.41 +0.6
1,544,126 - 14427 mRNA_6059 0.44 +0.8
1,544,138 - 14427 mRNA_6059 0.45 -0.3
1,544,144 + 14427 mRNA_6059 0.45 -0.5
1,544,187 - 14427 mRNA_6059 0.48 -0.6
1,544,188 + 14427 mRNA_6059 0.48 +0.4
1,544,192 + 14427 mRNA_6059 0.48 +1.0
1,544,282 - 14427 mRNA_6059 0.54 +2.6
1,544,291 - 14427 mRNA_6059 0.55 +0.2
1,544,291 - 14427 mRNA_6059 0.55 +0.1
1,544,295 + 14427 mRNA_6059 0.55 +1.5
1,544,450 + 14427 mRNA_6059 0.65 +0.3
1,544,474 + 14427 mRNA_6059 0.67 +0.6
1,544,551 - 14427 mRNA_6059 0.71 +0.7
1,544,584 + 14427 mRNA_6059 0.74 +0.9
1,544,590 + 14427 mRNA_6059 0.74 +0.1
1,544,856 + -0.2
1,544,856 + +0.4
1,544,887 + +1.7
1,544,943 - +0.6
1,544,994 + +1.3
1,545,035 - -0.2
1,545,042 + -0.7
1,545,051 + +1.3
1,545,177 - +0.2
1,545,206 + +2.5
1,545,324 + +0.6
1,545,355 - +0.4

Or see this region's nucleotide sequence