Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6102

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14469 and 14470 are separated by 640 nucleotides14470 and 14471 are separated by 573 nucleotides mRNA_6101: 14469 - KOG1303 Amino acid transporters, at 1,657,479 to 1,659,479 14469 mRNA_6102: 14470 - K14827 IPI1, TEX10 pre-rRNA-processing protein IPI1, at 1,660,120 to 1,663,221 14470 mRNA_6103: 14471 - K08762 DBI, ACBP diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein), at 1,663,795 to 1,664,238 14471

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,659,206 - 14469 mRNA_6101 0.86 -0.4
1,659,222 - 14469 mRNA_6101 0.87 -0.6
1,659,331 - +0.3
1,659,352 - -0.4
1,659,395 + +0.4
1,659,483 - -0.4
1,659,485 - -0.5
1,659,487 + +1.3
1,659,507 - -0.1
1,659,795 + +0.2
1,659,917 + -0.5
1,659,930 - +0.2
1,660,098 - -0.7
1,663,189 - +0.8
1,663,259 - +1.1
1,663,290 - +2.4
1,663,291 - -0.4
1,663,292 - -0.0
1,663,437 + +1.1
1,663,439 - +2.7
1,663,443 + +1.3
1,663,450 + -1.4
1,663,453 - +0.5
1,663,453 - +1.0
1,663,456 + -2.6
1,663,464 + -2.4
1,663,558 - -0.8
1,663,572 - -0.2
1,663,590 - +0.0
1,663,602 + +1.1
1,663,645 + +0.8
1,663,723 + -0.3
1,663,737 - +0.4
1,663,738 + -0.3
1,663,739 + -0.2
1,663,913 - 14471 mRNA_6103 0.27 -0.5
1,663,916 + 14471 mRNA_6103 0.27 +0.3
1,664,029 - 14471 mRNA_6103 0.53 -0.2

Or see this region's nucleotide sequence