Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6123

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14490 and 14491 are separated by 464 nucleotides14491 and 14492 are separated by 171 nucleotides mRNA_6122: 14490 - SUPERFAMILY--SSF53098, at 54,138 to 56,327 14490 mRNA_6123: 14491 - BLAST DNA polymerase [Rhizoctonia solani], at 56,792 to 57,276 14491 mRNA_6124: 14492 - Hypothetical Protein, at 57,448 to 58,239 14492

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
55,888 - 14490 mRNA_6122 0.80 -0.2
55,891 - 14490 mRNA_6122 0.80 -1.6
55,928 + 14490 mRNA_6122 0.82 -0.1
56,387 + +0.2
56,646 + -0.3
56,662 + -0.0
56,666 + -1.1
56,775 - -1.2
56,781 + +0.6
56,864 + 14491 mRNA_6123 0.15 -3.1
57,075 - 14491 mRNA_6123 0.58 +1.5
57,218 - 14491 mRNA_6123 0.88 -1.4
57,397 - +0.0
57,401 + +1.3
57,555 + 14492 mRNA_6124 0.14 +0.7
57,645 - 14492 mRNA_6124 0.25 -1.0
57,677 + 14492 mRNA_6124 0.29 +2.2
57,819 - 14492 mRNA_6124 0.47 -0.1
57,825 + 14492 mRNA_6124 0.48 +0.0
57,827 - 14492 mRNA_6124 0.48 -0.3
57,834 + 14492 mRNA_6124 0.49 +0.3
57,834 + 14492 mRNA_6124 0.49 -0.5
57,943 - 14492 mRNA_6124 0.62 +0.7
57,948 - 14492 mRNA_6124 0.63 +1.4
57,975 + 14492 mRNA_6124 0.67 -0.3
57,984 - 14492 mRNA_6124 0.68 +0.5
58,132 - 14492 mRNA_6124 0.86 +2.0
58,139 + 14492 mRNA_6124 0.87 -0.8
58,151 - 14492 mRNA_6124 0.89 +2.1
58,159 - 14492 mRNA_6124 0.90 +1.2
58,191 + +1.2

Or see this region's nucleotide sequence