Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6175

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14542 and 14543 are separated by 261 nucleotides mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176,764 to 178,095 14542 mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178,357 to 180,910 14543

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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177,712 + 14542 mRNA_6174 0.71 +1.6
178,108 - +1.1
178,194 + +0.2
178,223 + -2.5
178,250 + +0.7
178,526 + +0.6
178,918 + 14543 mRNA_6175 0.22 +0.7
179,309 + 14543 mRNA_6175 0.37 -1.0
179,350 - 14543 mRNA_6175 0.39 +1.4
179,401 + 14543 mRNA_6175 0.41 +0.4
179,546 + 14543 mRNA_6175 0.47 +1.2
179,550 - 14543 mRNA_6175 0.47 -1.2
179,723 - 14543 mRNA_6175 0.53 +2.3
179,817 + 14543 mRNA_6175 0.57 -0.1
179,860 - 14543 mRNA_6175 0.59 +0.2
180,227 + 14543 mRNA_6175 0.73 -0.0
180,234 - 14543 mRNA_6175 0.73 +0.9
180,241 - 14543 mRNA_6175 0.74 -0.1
180,433 - 14543 mRNA_6175 0.81 +0.7
180,548 + 14543 mRNA_6175 0.86 +0.6
180,548 + 14543 mRNA_6175 0.86 -0.5
180,715 + -0.5
180,861 + -0.7
180,987 - -0.1
181,023 - +0.5
181,173 - +1.6
181,182 + -1.3
181,190 - +0.1
181,315 - -1.1
181,321 - +0.9
181,338 - +1.2
181,360 - -0.2
181,361 + +1.5
181,394 - +0.2
181,493 - +0.3
181,517 - +2.1
181,529 - -0.7
181,802 - -0.6

Or see this region's nucleotide sequence