Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6183

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14550 and 14551 are separated by 658 nucleotides14551 and 14552 are separated by 821 nucleotides mRNA_6182: 14550 - K06665 SSN6 glucose repression mediator protein, at 196,153 to 199,901 14550 mRNA_6183: 14551 - Hypothetical Protein, at 200,560 to 201,520 14551 mRNA_6184: 14552 - Hypothetical Protein, at 202,342 to 203,677 14552

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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199,673 + +1.3
199,684 + +0.6
199,806 - -0.2
199,819 - +0.2
199,820 - -0.3
199,856 + -0.1
199,937 - -0.2
199,956 + -1.5
199,971 + -1.4
199,987 + -0.1
199,998 + +0.2
200,004 + -0.3
200,104 - +0.1
200,110 - -1.1
200,115 - -0.0
200,119 - -0.0
200,121 - -0.5
200,121 - +0.0
200,122 + -1.9
200,131 - -0.2
200,139 + -0.2
200,140 - +0.5
200,141 + -1.2
200,147 - -1.6
200,151 + -0.5
200,164 + +0.3
200,171 - -0.1
200,245 + +1.5
200,249 - +0.7
200,259 - -0.2
200,266 - +0.1
200,267 + +1.5
200,269 - +0.2
200,272 - -0.6
200,274 - +1.5
200,274 + -0.2
200,276 - -0.4
200,276 - -0.0
200,279 + +0.3
200,281 + -0.8
200,290 + -1.8
200,292 - -0.4
200,292 + -0.3
200,294 - +0.4
200,294 + +1.5
200,294 + -0.8
200,296 + -0.2
200,298 + +0.6
200,301 + +1.9
200,304 + +0.2
200,307 + +0.5
200,310 + +1.1
200,315 + -0.2
200,318 + +0.7
200,340 + +0.8
200,342 + -0.2
200,377 + -0.6
200,389 - -0.4
200,390 + +0.2
200,393 - +1.3
200,403 - -0.7
200,406 + +0.0
200,415 + +0.2
200,498 - +0.1
200,549 + +0.1
200,555 + -0.9
200,558 - -0.8
200,560 - +1.4
200,563 - +1.7
200,570 - +1.2
200,574 - +0.4
200,574 - +0.0
200,589 + -0.0
200,590 - +0.7
200,598 + -0.2
200,599 - +1.8
200,601 + -0.5
200,602 - +0.6
200,602 + +1.0
200,603 - +0.4
200,603 - -0.5
200,604 - +0.1
200,609 - -1.4
200,616 - +0.3
200,619 + -0.5
200,622 + +0.6
200,626 - +0.4
200,629 + -4.3
200,632 + +0.3
200,633 + +0.3
200,634 - -1.3
200,638 + -0.5
200,639 + -0.3
200,641 - -0.6
200,643 + -0.1
200,643 + +0.6
200,644 + +0.8
200,652 + -0.5
200,737 + 14551 mRNA_6183 0.18 -0.2
200,755 - 14551 mRNA_6183 0.20 +1.4
200,757 + 14551 mRNA_6183 0.20 +0.2
200,760 - 14551 mRNA_6183 0.21 +0.4
200,761 + 14551 mRNA_6183 0.21 -1.2
200,761 + 14551 mRNA_6183 0.21 +0.3
200,772 + 14551 mRNA_6183 0.22 +0.3
200,781 + 14551 mRNA_6183 0.23 -0.6
200,781 - 14551 mRNA_6183 0.23 +2.5
200,786 - 14551 mRNA_6183 0.24 +0.8
200,788 + 14551 mRNA_6183 0.24 +1.6
200,798 - 14551 mRNA_6183 0.25 -1.6
200,799 - 14551 mRNA_6183 0.25 -1.2
200,799 + 14551 mRNA_6183 0.25 +0.2
200,800 + 14551 mRNA_6183 0.25 -0.0
200,804 - 14551 mRNA_6183 0.25 -0.2
200,832 + 14551 mRNA_6183 0.28 +0.7
200,943 - 14551 mRNA_6183 0.40 -0.5
200,958 + 14551 mRNA_6183 0.41 -0.1
200,986 + 14551 mRNA_6183 0.44 -1.1
201,033 + 14551 mRNA_6183 0.49 +0.8
201,036 + 14551 mRNA_6183 0.50 +2.4
201,042 + 14551 mRNA_6183 0.50 +0.9
201,048 - 14551 mRNA_6183 0.51 +2.9
201,053 + 14551 mRNA_6183 0.51 +1.3
201,063 - 14551 mRNA_6183 0.52 +0.6
201,068 - 14551 mRNA_6183 0.53 +0.7
201,070 + 14551 mRNA_6183 0.53 +0.1
201,070 - 14551 mRNA_6183 0.53 -1.6
201,077 - 14551 mRNA_6183 0.54 -0.3
201,082 - 14551 mRNA_6183 0.54 -0.2
201,086 + 14551 mRNA_6183 0.55 -1.2
201,088 - 14551 mRNA_6183 0.55 -0.2
201,094 + 14551 mRNA_6183 0.56 -0.7
201,095 - 14551 mRNA_6183 0.56 -0.9
201,096 + 14551 mRNA_6183 0.56 +1.3
201,110 - 14551 mRNA_6183 0.57 +0.0
201,128 - 14551 mRNA_6183 0.59 -1.1
201,139 - 14551 mRNA_6183 0.60 +1.3
201,148 - 14551 mRNA_6183 0.61 +0.5
201,157 + 14551 mRNA_6183 0.62 -1.4
201,159 - 14551 mRNA_6183 0.62 -0.1
201,161 - 14551 mRNA_6183 0.63 -0.5
201,171 + 14551 mRNA_6183 0.64 +2.9
201,183 + 14551 mRNA_6183 0.65 -1.3
201,188 - 14551 mRNA_6183 0.65 +0.5
201,189 + 14551 mRNA_6183 0.65 +0.4
201,192 - 14551 mRNA_6183 0.66 -0.2
201,200 - 14551 mRNA_6183 0.67 -0.9
201,209 + 14551 mRNA_6183 0.68 +1.4
201,209 + 14551 mRNA_6183 0.68 +0.2
201,212 + 14551 mRNA_6183 0.68 +0.1
201,213 + 14551 mRNA_6183 0.68 -0.2
201,219 + 14551 mRNA_6183 0.69 -0.2
201,228 + 14551 mRNA_6183 0.70 -0.0
201,235 - 14551 mRNA_6183 0.70 +0.7
201,243 + 14551 mRNA_6183 0.71 +0.5
201,264 + 14551 mRNA_6183 0.73 +2.2
201,292 - 14551 mRNA_6183 0.76 +2.2
201,345 + 14551 mRNA_6183 0.82 +1.9
201,366 - 14551 mRNA_6183 0.84 +2.5
201,399 + 14551 mRNA_6183 0.87 -0.2
201,422 + 14551 mRNA_6183 0.90 -0.8
201,431 + -0.7
201,448 - -2.7
201,457 - -0.1
201,468 - +0.0
201,469 - -1.6
201,471 - +0.7
201,473 - +1.9
201,479 - -0.2
201,482 + +0.0
201,492 + -0.5
201,493 - +1.6
201,493 + -0.1
201,635 - -0.0
201,648 + +0.3
201,649 - +2.5
201,663 - -0.3
201,682 - +0.4
201,804 + +1.5
201,931 + +1.0
201,961 - -0.7
202,094 + -0.2
202,103 + +0.1

Or see this region's nucleotide sequence