Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6260

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14627 and 14628 are separated by 463 nucleotides mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374,998 to 377,098 14627 mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377,562 to 381,779 14628

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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377,019 - -0.7
377,463 - +0.4
377,929 - +0.9
378,598 - 14628 mRNA_6260 0.25 +1.0
378,739 - 14628 mRNA_6260 0.28 +0.3
378,758 - 14628 mRNA_6260 0.28 +0.3
378,900 + 14628 mRNA_6260 0.32 +0.8
379,070 + 14628 mRNA_6260 0.36 -0.6
379,649 - 14628 mRNA_6260 0.49 +0.6
379,743 - 14628 mRNA_6260 0.52 +0.3
379,748 + 14628 mRNA_6260 0.52 +0.6
380,066 - 14628 mRNA_6260 0.59 +0.2
380,082 - 14628 mRNA_6260 0.60 -0.1
380,660 + 14628 mRNA_6260 0.73 +0.7
380,821 - 14628 mRNA_6260 0.77 +0.9
380,943 - 14628 mRNA_6260 0.80 -0.5
380,964 - 14628 mRNA_6260 0.81 +0.6
381,410 - +1.2
381,534 - -0.2
381,559 + +0.4
381,687 - +0.2
381,740 - +0.0
381,847 + -0.4
381,855 - +0.0
381,867 + +0.5
381,867 + -0.2
381,874 + -0.1
381,882 - -0.7
381,896 + +0.9
381,899 + +1.7
381,936 - -0.1
381,941 + +0.8
381,941 + +1.6
381,942 - +1.9
381,943 - +1.0
381,943 - +0.9
381,946 + +1.5
381,946 + +0.1
381,948 + -0.8
381,948 - +1.7
381,964 - +0.8
381,979 - +1.3
381,981 + +0.5
381,993 + +0.2
382,008 - -0.5
382,089 + -0.8
382,089 + +0.7
382,104 + +0.6
382,110 - +0.2
382,132 + +0.8
382,143 - -0.3
382,189 - -0.1
382,195 - +0.5
382,212 + -0.6
382,220 + -0.4
382,238 - -0.5
382,240 - -1.0
382,249 + -0.8
382,254 - -0.1
382,264 - -1.1
382,289 - -0.5
382,293 - +0.6
382,307 + -0.3
382,324 + +0.2
382,332 + +1.5
382,340 + -0.9
382,345 + +0.2
382,349 - -0.5
382,360 + +0.5
382,363 + -0.9
382,365 + +0.9
382,369 + -0.4
382,370 - +2.5
382,370 - +1.1
382,375 + +1.3
382,381 + +1.0
382,418 - +0.4
382,423 + +0.1
382,433 + +1.4
382,434 - +0.3
382,436 + +0.0
382,436 - -0.7
382,436 - +2.0
382,437 - +0.2
382,448 - -1.2
382,449 + -0.5
382,451 + +0.5
382,471 - +0.5
382,503 + -1.2
382,516 + +0.6
382,529 - -0.2
382,531 + -1.5
382,531 + -0.1
382,535 + +1.4
382,542 + +0.2
382,543 - +0.3
382,546 - +0.3
382,549 - +0.3
382,550 - +0.3
382,556 + -0.9
382,566 - -0.2
382,570 - +1.0
382,571 - +1.0
382,573 - +0.5
382,575 - +1.2
382,583 - +0.5
382,583 - +0.1
382,586 + +0.2
382,586 + -1.3
382,587 + -0.7
382,588 - +0.3
382,588 - -0.5
382,590 - +0.0
382,592 - +0.1
382,594 + +0.3
382,603 + -0.0
382,652 - -0.1
382,663 - +0.8
382,691 - +0.1
382,695 + +0.3
382,700 + +0.3
382,707 - +2.2
382,713 - +1.8
382,724 + +0.9
382,726 + +0.6
382,732 + +1.1

Or see this region's nucleotide sequence