Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6261

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14629 and 14630 are separated by 464 nucleotides mRNA_6261: 14629 - K09274 K09274 HMG box factor, other, at 383,014 to 384,624 14629 mRNA_6262: 14630 - SMART-Gelsolin homology domain-SM00262,SUPERFAMILY--SSF55753, at 385,089 to 388,417 14630

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
382,089 + -0.8
382,089 + +0.7
382,104 + +0.6
382,110 - +0.2
382,132 + +0.8
382,143 - -0.3
382,189 - -0.1
382,195 - +0.5
382,212 + -0.6
382,220 + -0.4
382,238 - -0.5
382,240 - -1.0
382,249 + -0.8
382,254 - -0.1
382,264 - -1.1
382,289 - -0.5
382,293 - +0.6
382,307 + -0.3
382,324 + +0.2
382,332 + +1.5
382,340 + -0.9
382,345 + +0.2
382,349 - -0.5
382,360 + +0.5
382,363 + -0.9
382,365 + +0.9
382,369 + -0.4
382,370 - +2.5
382,370 - +1.1
382,375 + +1.3
382,381 + +1.0
382,418 - +0.4
382,423 + +0.1
382,433 + +1.4
382,434 - +0.3
382,436 + +0.0
382,436 - -0.7
382,436 - +2.0
382,437 - +0.2
382,448 - -1.2
382,449 + -0.5
382,451 + +0.5
382,471 - +0.5
382,503 + -1.2
382,516 + +0.6
382,529 - -0.2
382,531 + -1.5
382,531 + -0.1
382,535 + +1.4
382,542 + +0.2
382,543 - +0.3
382,546 - +0.3
382,549 - +0.3
382,550 - +0.3
382,556 + -0.9
382,566 - -0.2
382,570 - +1.0
382,571 - +1.0
382,573 - +0.5
382,575 - +1.2
382,583 - +0.5
382,583 - +0.1
382,586 + +0.2
382,586 + -1.3
382,587 + -0.7
382,588 - +0.3
382,588 - -0.5
382,590 - +0.0
382,592 - +0.1
382,594 + +0.3
382,603 + -0.0
382,652 - -0.1
382,663 - +0.8
382,691 - +0.1
382,695 + +0.3
382,700 + +0.3
382,707 - +2.2
382,713 - +1.8
382,724 + +0.9
382,726 + +0.6
382,732 + +1.1
382,866 - +0.2
382,884 + -0.5
383,004 - +0.9
383,005 + +2.1
383,014 - +0.6
383,016 + +0.2
383,158 - +0.0
383,166 + -1.0
383,738 - 14629 mRNA_6261 0.45 -0.0
383,822 + 14629 mRNA_6261 0.50 -0.5
383,893 - 14629 mRNA_6261 0.55 -0.3
383,903 + 14629 mRNA_6261 0.55 +0.3
384,042 - 14629 mRNA_6261 0.64 +1.8
384,044 + 14629 mRNA_6261 0.64 +0.4
384,045 - 14629 mRNA_6261 0.64 -1.9
384,188 + 14629 mRNA_6261 0.73 +0.4
384,494 - +0.1
384,502 - +0.3
384,654 - +1.1
384,686 - -2.4
384,779 - +0.5
384,801 - -0.5
384,803 - +0.4
384,812 + +2.5
384,823 - -0.1
384,848 - +0.1
384,850 - +2.6
384,867 + -0.6
384,877 - +0.1
384,883 - +2.2
384,893 - +0.9
384,894 - +0.5
384,897 + +0.4
384,897 + -1.7
384,899 + +0.8
384,900 + -0.9
384,905 - +1.0
384,933 + -0.5
384,934 - -0.1
384,934 - +0.0
384,939 + +0.3
384,940 - +0.3
384,940 - +0.2
384,946 + +0.7
384,955 + -0.2
384,964 - +0.7
384,976 + +0.1
384,983 - +0.6
384,993 - -0.3
385,074 - +0.2
385,079 - +1.4
385,080 + +1.1
385,087 - +1.4
385,091 + +0.4
385,092 - -0.9
385,186 + +0.5
385,217 + -1.4
385,257 - +0.9
385,276 + +1.2
385,297 - -0.1
385,329 - +2.6
385,332 + +0.2
385,363 - +0.3
385,389 - -0.5
385,394 - -0.3
385,401 - +0.2
385,558 + 14630 mRNA_6262 0.14 +2.1

Or see this region's nucleotide sequence