Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6285

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14652 and 14653 are separated by 185 nucleotides14653 and 14654 are separated by 286 nucleotides mRNA_6284: 14652 - BLAST macrofage activating glycoprotein, putative [Rhizocto..., at 440,723 to 442,428 14652 mRNA_6285: 14653 - K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5, at 442,614 to 443,927 14653 mRNA_6286: 14654 - HMMPfam-Protein of unknown function (DUF3128)-PF11326, at 444,214 to 444,568 14654

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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441,851 + 14652 mRNA_6284 0.66 -1.1
441,966 + 14652 mRNA_6284 0.73 -1.3
441,970 + 14652 mRNA_6284 0.73 -0.4
442,014 + 14652 mRNA_6284 0.76 +0.1
442,155 - 14652 mRNA_6284 0.84 +0.5
442,261 + +1.3
442,388 + +2.2
442,407 + +2.1
442,428 - +2.1
442,428 + +0.5
442,431 - -0.0
442,576 + +1.2
442,714 + +1.0
443,144 - 14653 mRNA_6285 0.40 -0.6
443,621 - 14653 mRNA_6285 0.77 +0.4
443,866 + +1.5
444,013 - +0.2
444,722 - +0.7
444,853 - +0.6
444,867 - +0.0
444,868 - +1.0
444,872 + +1.2

Or see this region's nucleotide sequence