Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6306

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14674 and 14675 are separated by 284 nucleotides mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487,533 to 494,216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494,501 to 498,811 14675

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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486,564 - -0.1
486,641 + +0.3
486,657 - +0.9
486,779 - -1.9
486,782 - -1.0
486,812 + -1.4
486,957 + -0.8
486,962 - +0.2
486,963 + -0.3
486,980 - -1.3
486,981 + +0.7
487,111 + +0.4
487,247 - +0.6
487,372 + -0.4
487,561 - +0.0
488,091 + -1.3
488,117 - -0.5
488,124 + -0.2
488,286 - 14674 mRNA_6306 0.11 -0.2
489,269 - 14674 mRNA_6306 0.26 +0.1
489,281 - 14674 mRNA_6306 0.26 +0.1
489,605 - 14674 mRNA_6306 0.31 -1.0
489,721 + 14674 mRNA_6306 0.33 +0.3
489,731 + 14674 mRNA_6306 0.33 +1.3
490,438 - 14674 mRNA_6306 0.43 +0.2
490,459 + 14674 mRNA_6306 0.44 -0.7
490,903 - 14674 mRNA_6306 0.50 +0.7
491,341 + 14674 mRNA_6306 0.57 +1.2
491,727 + 14674 mRNA_6306 0.63 +1.1
491,730 - 14674 mRNA_6306 0.63 -0.9
491,788 + 14674 mRNA_6306 0.64 +0.8
492,952 - 14674 mRNA_6306 0.81 +0.4
493,022 + 14674 mRNA_6306 0.82 +0.0
493,236 + 14674 mRNA_6306 0.85 -1.1
493,554 - -0.1
494,285 - +0.3
494,308 - +1.0
494,415 + -1.7
494,446 - +1.3
494,463 + +0.9
494,591 + +0.2
494,604 - -0.6
494,604 - +0.2
494,613 + +0.8
494,615 - +1.0
494,643 + -0.8
494,755 - +0.9
494,779 - +2.1
494,881 - +0.8
494,893 - +1.4
494,894 + -1.0
494,900 - +0.6
494,909 + +2.2
494,912 - +0.2
494,917 + -0.1
494,930 + +0.3
494,943 - 14675 mRNA_6307 0.10 -1.9
495,071 - 14675 mRNA_6307 0.13 +0.5
495,208 - 14675 mRNA_6307 0.16 +0.3

Or see this region's nucleotide sequence