Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6318

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14685 and 14686 are separated by 487 nucleotides14686 and 14687 are separated by 507 nucleotides mRNA_6317: 14685 - K11649 SMARCC SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C, at 532,881 to 534,866 14685 mRNA_6318: 14686 - Hypothetical Protein, at 535,354 to 538,435 14686 mRNA_6319: 14687 - KOG1729 FYVE finger containing protein, at 538,943 to 540,662 14687

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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534,906 + -0.6
534,916 - +0.6
534,924 - +1.7
534,925 + -0.1
534,926 + +0.7
534,936 + +1.7
535,061 + +0.4
535,211 + +0.7
535,217 + -1.5
535,489 - +0.4
535,530 + -0.2
535,828 + 14686 mRNA_6318 0.15 +0.5
536,134 + 14686 mRNA_6318 0.25 +0.4
536,544 - 14686 mRNA_6318 0.39 +0.2
537,422 - 14686 mRNA_6318 0.67 -0.4
537,446 - 14686 mRNA_6318 0.68 -0.7
537,730 + 14686 mRNA_6318 0.77 -0.8
537,764 - 14686 mRNA_6318 0.78 +0.6
537,901 - 14686 mRNA_6318 0.83 +0.6
538,199 - +0.8
538,377 + -0.0
538,450 + +0.3
538,485 - -0.5
538,769 + -0.3
538,772 + +2.4
538,915 - +0.6
539,219 + 14687 mRNA_6319 0.16 +0.8
539,331 + 14687 mRNA_6319 0.23 -0.2

Or see this region's nucleotide sequence