Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6321

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14688 and 14689 are separated by 684 nucleotides14689 and 14690 are separated by 213 nucleotides mRNA_6320: 14688 - Hypothetical Protein, at 540,621 to 541,463 14688 mRNA_6321: 14689 - Hypothetical Protein, at 542,148 to 544,178 14689 mRNA_6322: 14690 - K09420 MYB myb proto-oncogene protein, at 544,392 to 544,811 14690

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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541,149 + 14688 mRNA_6320 0.63 +0.4
541,149 - 14688 mRNA_6320 0.63 +0.8
541,155 + 14688 mRNA_6320 0.63 +1.4
541,159 + 14688 mRNA_6320 0.64 +1.3
541,165 - 14688 mRNA_6320 0.65 +1.1
541,171 - 14688 mRNA_6320 0.65 +2.0
541,182 + 14688 mRNA_6320 0.67 +1.5
541,182 - 14688 mRNA_6320 0.67 -0.3
541,184 + 14688 mRNA_6320 0.67 +0.4
541,226 + 14688 mRNA_6320 0.72 -0.6
541,234 - 14688 mRNA_6320 0.73 +0.1
541,235 - 14688 mRNA_6320 0.73 +0.4
541,237 + 14688 mRNA_6320 0.73 +1.0
541,248 + 14688 mRNA_6320 0.74 +1.5
541,250 + 14688 mRNA_6320 0.75 +0.5
541,252 - 14688 mRNA_6320 0.75 +0.3
541,253 + 14688 mRNA_6320 0.75 +0.1
541,264 - 14688 mRNA_6320 0.76 +1.0
541,293 - 14688 mRNA_6320 0.80 +0.7
541,295 - 14688 mRNA_6320 0.80 -0.1
541,330 + 14688 mRNA_6320 0.84 +0.2
541,332 - 14688 mRNA_6320 0.84 +1.6
541,334 - 14688 mRNA_6320 0.85 +0.5
541,343 - 14688 mRNA_6320 0.86 -1.7
541,348 - 14688 mRNA_6320 0.86 +0.4
541,360 - 14688 mRNA_6320 0.88 -0.7
541,371 - 14688 mRNA_6320 0.89 +0.2
541,373 + 14688 mRNA_6320 0.89 +0.4
541,380 + +0.4
541,380 + +0.3
541,397 - -1.1
541,405 + -1.1
541,411 - +0.4
541,464 + -0.1
541,476 - -0.3
541,483 + +0.1
541,501 + +1.3
541,510 + +1.6
541,517 - -0.2
541,520 + +1.5
541,525 + -1.1
541,529 - +0.7
541,668 + +0.5
541,670 - -0.8
541,679 + -0.2
541,696 + +0.0
541,713 + +0.6
541,754 - +0.2
541,829 - +0.4
541,833 + +0.6
542,265 - +0.8
542,388 + 14689 mRNA_6321 0.12 +0.8
542,552 + 14689 mRNA_6321 0.20 +0.6
542,554 - 14689 mRNA_6321 0.20 +0.1
542,559 - 14689 mRNA_6321 0.20 +0.7
542,714 + 14689 mRNA_6321 0.28 -0.0
542,859 + 14689 mRNA_6321 0.35 +0.1
543,010 + 14689 mRNA_6321 0.42 +0.8
543,577 + 14689 mRNA_6321 0.70 +2.3
543,670 + 14689 mRNA_6321 0.75 +0.7
544,019 - +0.1
544,021 - +0.2
544,171 - +0.0
544,300 - +0.4
544,595 + 14690 mRNA_6322 0.48 +0.3
544,599 + 14690 mRNA_6322 0.49 +1.8
544,605 + 14690 mRNA_6322 0.51 +2.1
544,611 - 14690 mRNA_6322 0.52 +1.1
544,619 + 14690 mRNA_6322 0.54 +1.3
544,751 + 14690 mRNA_6322 0.85 +0.8
544,760 - 14690 mRNA_6322 0.88 +0.2
544,814 - +2.1
544,877 - +2.1
544,890 - +0.8
545,170 - -1.1

Or see this region's nucleotide sequence