Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6420

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14787 and 14788 are separated by 83 nucleotides14788 and 14789 are separated by 215 nucleotides14789 and 14790 are separated by 0 nucleotides mRNA_6419: 14787 - KOG0744 AAA+-type ATPase, at 761,703 to 763,959 14787 mRNA_6420: 14788 - K14263 BNA7 kynurenine formamidase, at 764,043 to 765,055 14788 mRNA_6421: 14789 - SUPERFAMILY--SSF82199, at 765,271 to 766,029 14789 mRNA_6422: 14790 - KOG2084 Predicted histone tail methylase containing SET domain, at 766,030 to 767,975 14790

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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763,378 + 14787 mRNA_6419 0.74 +0.2
763,897 + -1.3
763,981 + +0.4
764,519 + 14788 mRNA_6420 0.47 +0.4
764,569 + 14788 mRNA_6420 0.52 -1.0
764,829 - 14788 mRNA_6420 0.78 -0.3
765,008 - +2.2
765,014 + +0.2
765,047 - +1.4
765,100 - +0.9
765,101 - +2.4
765,124 - +2.5
765,129 + +0.4
765,131 - +0.7
765,132 - -0.1
765,141 - +0.1
765,155 + -1.4
765,251 + +0.6
765,289 + +0.4
765,402 - 14789 mRNA_6421 0.17 +1.1
765,561 - 14789 mRNA_6421 0.38 -0.8
765,684 + 14789 mRNA_6421 0.54 -1.1
765,722 + 14789 mRNA_6421 0.59 -1.8

Or see this region's nucleotide sequence