Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6431

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14798 and 14799 are separated by 380 nucleotides14799 and 14800 are separated by 402 nucleotides mRNA_6430: 14798 - KOG3112 Uncharacterized conserved protein, at 785,004 to 786,145 14798 mRNA_6431: 14799 - Hypothetical Protein, at 786,526 to 787,659 14799 mRNA_6432: 14800 - K18203 LCMT1 [phosphatase 2A protein]-leucine-carboxy methyltransferase, at 788,062 to 789,443 14800

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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785,797 + 14798 mRNA_6430 0.69 -1.2
785,970 - 14798 mRNA_6430 0.85 -1.5
786,141 + -0.4
786,150 - -1.4
786,260 + -0.3
786,263 - -1.0
786,270 - +0.5
786,379 - +0.7
786,424 - +1.2
786,425 - +0.0
786,563 - -0.5
786,575 + +0.8
787,076 - 14799 mRNA_6431 0.49 +2.0
787,191 - 14799 mRNA_6431 0.59 +0.1
787,205 - 14799 mRNA_6431 0.60 +0.8
787,294 - 14799 mRNA_6431 0.68 +0.5
787,494 + 14799 mRNA_6431 0.85 -1.2
787,554 + -0.0
787,884 - +0.6
787,897 - +1.1
788,026 - +1.4
788,246 - 14800 mRNA_6432 0.13 +0.6
788,330 - 14800 mRNA_6432 0.19 +0.6
788,465 + 14800 mRNA_6432 0.29 +1.3

Or see this region's nucleotide sequence