Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6486

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14853 and 14854 are separated by 499 nucleotides14854 and 14855 are separated by 775 nucleotides mRNA_6485: 14853 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 898,441 to 899,753 14853 mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900,253 to 901,810 14854 mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902,586 to 904,816 14855

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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899,270 - 14853 mRNA_6485 0.63 +2.1
899,426 - 14853 mRNA_6485 0.75 -0.3
899,852 - +0.7
899,875 + -0.1
899,900 - -0.8
899,902 - -0.4
900,013 - -0.1
900,039 - +0.5
900,194 - -0.2
900,200 + -0.6
900,213 - +0.2
900,320 + +0.7
900,480 - 14854 mRNA_6486 0.15 +0.0
900,983 - 14854 mRNA_6486 0.47 +1.7
901,226 - 14854 mRNA_6486 0.62 +0.6
901,588 + 14854 mRNA_6486 0.86 -0.4
901,936 - -1.5
901,961 - -0.2
901,962 + -2.4
901,963 - +0.9
901,967 + +0.7
901,986 + +0.4
901,989 + +2.7
901,997 - +1.2
902,020 + +0.0
902,095 - +0.5
902,104 + +0.7
902,129 - -0.1
902,134 + +1.5
902,143 - +0.3
902,157 + +0.7
902,161 + -0.4
902,178 - +0.8
902,252 - +0.4
902,279 - -0.9
902,291 + +0.4
902,298 - -1.3
902,308 + -0.3
902,364 - -0.9
902,364 + -0.6
902,415 + +0.1
902,428 - +0.5
902,572 - -0.7
902,579 - +1.7
902,594 - +0.6
902,643 + +1.4

Or see this region's nucleotide sequence