Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6542

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14909 and 14910 are separated by 332 nucleotides14910 and 14911 are separated by 421 nucleotides mRNA_6541: 14909 - K14819 DUSP12, YVH1 dual specificity phosphatase 12, at 1,034,476 to 1,036,379 14909 mRNA_6542: 14910 - BLAST WSC domain containing protein [Zymoseptoria brevis], at 1,036,712 to 1,039,171 14910 mRNA_6543: 14911 - K08712 ABCG2.SNQ2 ATP-binding cassette, subfamily G (WHITE), member 2, SNQ2, at 1,039,593 to 1,046,261 14911

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,037,621 + 14910 mRNA_6542 0.37 +0.4
1,037,803 + 14910 mRNA_6542 0.44 +0.2
1,037,886 - 14910 mRNA_6542 0.48 -0.6
1,038,066 - 14910 mRNA_6542 0.55 -0.6
1,038,371 - 14910 mRNA_6542 0.67 +2.2
1,038,377 + 14910 mRNA_6542 0.68 +0.2
1,038,519 - 14910 mRNA_6542 0.73 +0.6
1,038,520 + 14910 mRNA_6542 0.73 +0.0
1,038,522 - 14910 mRNA_6542 0.74 -0.3
1,038,530 - 14910 mRNA_6542 0.74 +1.5
1,038,532 - 14910 mRNA_6542 0.74 -0.3
1,038,534 + 14910 mRNA_6542 0.74 +0.0
1,038,542 - 14910 mRNA_6542 0.74 +0.1
1,038,545 + 14910 mRNA_6542 0.75 -2.1
1,038,551 + 14910 mRNA_6542 0.75 +0.8
1,038,552 - 14910 mRNA_6542 0.75 -1.7
1,038,671 - 14910 mRNA_6542 0.80 +0.8
1,038,678 - 14910 mRNA_6542 0.80 +0.6
1,038,679 - 14910 mRNA_6542 0.80 +0.5
1,038,697 + 14910 mRNA_6542 0.81 -0.0
1,038,705 + 14910 mRNA_6542 0.81 +0.1
1,038,974 + -0.2
1,038,985 - +1.6
1,038,988 + +0.5
1,038,993 + +2.9
1,039,127 - +0.7
1,039,138 + -0.2
1,039,143 + -0.3
1,039,271 - -0.7
1,039,276 - +0.3
1,039,277 - +0.2
1,039,278 - +0.9
1,039,278 - -0.6
1,039,287 - +1.1
1,039,290 - +0.7
1,039,309 - +0.3
1,039,361 + +1.3
1,039,388 + +0.9
1,039,427 - -0.7
1,039,437 - +0.6
1,039,443 - +0.6
1,039,448 - +0.6
1,040,016 - -1.3

Or see this region's nucleotide sequence