Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6601

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14968 and 14969 are separated by 783 nucleotides14969 and 14970 are separated by 468 nucleotides mRNA_6600: 14968 - Hypothetical Protein, at 1,197,421 to 1,199,600 14968 mRNA_6601: 14969 - K04512 DAAM dishevelled associated activator of morphogenesis, at 1,200,384 to 1,206,346 14969 mRNA_6602: 14970 - K07953 SAR1 GTP-binding protein SAR1, at 1,206,815 to 1,208,411 14970

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,199,645 - -0.2
1,199,758 + +1.3
1,199,779 - -0.6
1,199,791 - +0.9
1,199,809 - -0.3
1,199,942 + +2.0
1,199,960 - +1.2
1,199,966 + -0.3
1,199,970 - +0.0
1,199,989 + -0.4
1,199,994 - +0.2
1,200,078 - -0.2
1,200,113 + -0.7
1,200,154 + +1.8
1,200,249 - -2.2
1,201,105 - 14969 mRNA_6601 0.12 -0.9
1,201,157 - 14969 mRNA_6601 0.13 -0.1
1,201,754 - 14969 mRNA_6601 0.23 -0.9
1,202,049 + 14969 mRNA_6601 0.28 +0.5
1,202,330 + 14969 mRNA_6601 0.33 -0.1
1,202,772 - 14969 mRNA_6601 0.40 +1.1
1,205,914 + +0.5
1,206,472 + -0.6
1,206,566 - +0.1
1,206,570 + -0.6
1,206,683 + -0.6
1,206,770 + -1.0

Or see this region's nucleotide sequence