Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6682

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15050 and 15051 are separated by 207 nucleotides mRNA_6682: 15050 - HMMPfam-Roadblock/LC7 domain-PF03259,SMART-Roadblock/LC7 domain-SM00960,SUPERFAMILY--SSF103196, at 1,433,664 to 1,434,403 15050 mRNA_6683: 15051 - HMMPfam-Thioesterase-like superfamily-PF13622, at 1,434,611 to 1,435,976 15051

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,432,726 - +1.8
1,432,727 + +0.4
1,432,732 + -1.3
1,432,739 + -0.2
1,432,742 + +1.1
1,432,781 + +1.6
1,432,797 + +0.3
1,432,815 - -0.9
1,432,828 + -0.5
1,432,886 - +0.5
1,432,889 + +0.7
1,432,894 + -1.2
1,432,902 + -0.3
1,432,903 - -0.4
1,432,913 + +0.5
1,433,018 + +0.4
1,433,033 + +0.9
1,433,037 + +0.2
1,433,173 - +0.2
1,433,313 - +0.0
1,433,334 + +0.1
1,433,469 + +0.8
1,433,625 + -0.5
1,434,460 - +1.2
1,434,484 - +1.1
1,434,493 - +2.0
1,434,493 - +0.3
1,434,494 + -0.5
1,434,507 - +2.0
1,434,515 + +1.9
1,434,524 + +0.3
1,434,536 - -0.5
1,434,539 + +1.2
1,434,539 - +0.6
1,434,540 + +1.9
1,434,542 + +1.4
1,434,542 - +0.8
1,434,543 - +0.6
1,434,544 + -0.1
1,434,544 + -0.3
1,434,544 + +1.1
1,434,549 + +0.1
1,434,552 - +0.4
1,434,562 + +1.3
1,434,694 - +0.2
1,434,705 - +0.5
1,434,707 - +2.2
1,434,719 - +0.1
1,434,818 + 15051 mRNA_6683 0.15 +0.4
1,434,823 - 15051 mRNA_6683 0.16 +1.1
1,434,828 - 15051 mRNA_6683 0.16 +0.3
1,434,832 + 15051 mRNA_6683 0.16 +1.6
1,434,832 + 15051 mRNA_6683 0.16 -2.4
1,434,848 + 15051 mRNA_6683 0.17 +0.9
1,434,989 + 15051 mRNA_6683 0.28 -1.5
1,434,993 - 15051 mRNA_6683 0.28 +0.1
1,435,128 - 15051 mRNA_6683 0.38 +0.4
1,435,135 + 15051 mRNA_6683 0.38 +0.4

Or see this region's nucleotide sequence