Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6698

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15065 and 15066 are separated by 350 nucleotides15066 and 15067 are separated by 378 nucleotides mRNA_6697: 15065 - K07188 LIPE, HSL hormone-sensitive lipase, at 1,472,035 to 1,475,787 15065 mRNA_6698: 15066 - K00819 rocD, OAT ornithine--oxo-acid transaminase, at 1,476,138 to 1,478,780 15066 mRNA_6699: 15067 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,PIRSF--PIRSF037226,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,479,159 to 1,480,660 15067

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,475,245 + 15065 mRNA_6697 0.86 +1.3
1,475,412 + -0.3
1,475,421 - -0.2
1,475,453 + -0.6
1,475,552 - +0.9
1,475,560 + +0.5
1,475,561 + -1.1
1,475,568 + +0.4
1,475,591 + +0.5
1,475,684 - -0.4
1,475,719 - +0.2
1,475,879 + -0.1
1,475,889 + +0.9
1,475,894 - +1.6
1,475,932 - -1.0
1,475,938 - +0.4
1,475,944 + +0.4
1,476,041 - +0.4
1,476,044 - +1.1
1,476,085 + -0.2
1,476,196 + -0.0
1,476,196 + +0.4
1,476,319 + +0.4
1,476,359 - -0.1
1,476,486 + 15066 mRNA_6698 0.13 -0.1
1,476,490 + 15066 mRNA_6698 0.13 -0.4
1,476,946 + 15066 mRNA_6698 0.31 +2.0
1,477,033 - 15066 mRNA_6698 0.34 +1.2
1,477,640 + 15066 mRNA_6698 0.57 +0.8
1,477,918 + 15066 mRNA_6698 0.67 +3.1
1,478,217 + 15066 mRNA_6698 0.79 -0.3
1,478,228 - 15066 mRNA_6698 0.79 -0.8
1,478,235 - 15066 mRNA_6698 0.79 +2.1
1,478,370 + 15066 mRNA_6698 0.84 -0.4
1,478,512 + 15066 mRNA_6698 0.90 -0.1
1,478,547 + +0.5
1,478,666 - +1.3
1,478,679 - -0.2
1,478,685 + +0.5
1,478,835 + +0.2
1,478,978 + +0.6
1,479,005 + +0.4
1,479,078 - +1.0
1,479,087 + -1.5
1,479,126 + -2.0
1,479,140 + +0.3
1,479,162 - +0.8
1,479,265 + +0.0
1,479,302 - +0.7
1,479,439 - 15067 mRNA_6699 0.19 +0.1
1,479,482 + 15067 mRNA_6699 0.22 -1.7
1,479,560 + 15067 mRNA_6699 0.27 +0.1
1,479,561 - 15067 mRNA_6699 0.27 +1.1
1,479,727 - 15067 mRNA_6699 0.38 -0.5

Or see this region's nucleotide sequence