Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6852

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15220 and 15221 are separated by 430 nucleotides mRNA_6852: 15220 - KOG1337 N-methyltransferase, at 277,485 to 279,463 15220 mRNA_6853: 15221 - Interpro Altered inheritance of mitochondria 5, at 279,894 to 280,567 15221

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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276,506 - -2.0
276,515 + -1.2
276,525 - +0.4
276,615 - +1.5
276,639 - +1.6
276,952 + -0.5
277,098 + -0.8
277,105 + +0.5
277,112 + +0.7
277,121 - -1.1
277,267 - -1.0
277,404 + +0.4
277,447 + -0.5
277,447 + -3.2
277,579 - -0.0
277,735 - 15220 mRNA_6852 0.13 -0.2
277,743 - 15220 mRNA_6852 0.13 +0.2
278,006 + 15220 mRNA_6852 0.26 +0.2
278,388 + 15220 mRNA_6852 0.46 +0.4
278,391 - 15220 mRNA_6852 0.46 +0.0
279,322 + +1.0
279,323 - +0.9
279,460 + +1.6
279,629 - -1.3
279,750 - +0.2
280,076 + 15221 mRNA_6853 0.27 +0.6
280,083 - 15221 mRNA_6853 0.28 -0.8
280,325 - 15221 mRNA_6853 0.64 +0.9
280,326 - 15221 mRNA_6853 0.64 -0.4
280,328 - 15221 mRNA_6853 0.64 -0.7
280,344 + 15221 mRNA_6853 0.67 +0.3
280,433 - 15221 mRNA_6853 0.80 -1.4

Or see this region's nucleotide sequence