Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6860

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15227 and 15228 are separated by 594 nucleotides15228 and 15229 are separated by 283 nucleotides mRNA_6859: 15227 - K16794 PAFAH1B1, LIS1 platelet-activating factor acetylhydrolase IB subunit alpha, at 297,202 to 298,993 15227 mRNA_6860: 15228 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 299,588 to 301,362 15228 mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301,646 to 303,773 15229

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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299,073 + +0.2
299,190 - -0.4
299,389 - +2.4
299,395 - -0.0
299,395 + +0.4
299,458 + +0.4
299,516 - +0.7
299,629 - +1.1
299,642 + +0.8
299,657 - +0.0
299,657 - +1.5
299,660 - -0.0
299,661 + +0.4
299,665 + -1.1
299,667 + -0.9
299,667 + +0.7
299,674 - +1.9
299,674 - +3.2
299,675 + -1.0
299,687 + -1.6
299,691 + +0.3
299,697 - +0.4
299,714 + -0.0
299,985 - 15228 mRNA_6860 0.22 +2.7
300,114 - 15228 mRNA_6860 0.30 -0.3
300,124 + 15228 mRNA_6860 0.30 -1.7
300,178 + 15228 mRNA_6860 0.33 +0.0
300,556 + 15228 mRNA_6860 0.55 +0.4
300,988 - 15228 mRNA_6860 0.79 +1.3
301,033 - 15228 mRNA_6860 0.81 -1.0
301,269 + +0.4
301,297 + +1.5
301,412 + -0.6
301,422 + +0.8
301,428 - +0.5
301,545 - +0.3
301,547 + +0.0
301,556 + -0.6
301,569 - -1.0
301,570 - +1.7
301,571 - -1.2
301,583 - -0.3
301,716 + +0.4
301,719 + -0.8
301,862 + 15229 mRNA_6861 0.10 -1.7
302,042 + 15229 mRNA_6861 0.19 +0.6
302,157 + 15229 mRNA_6861 0.24 +1.1

Or see this region's nucleotide sequence