Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6884

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15251 and 15252 are separated by 281 nucleotides15252 and 15253 are separated by 102 nucleotides mRNA_6883: 15251 - BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308], at 348,850 to 350,156 15251 mRNA_6884: 15252 - K00943 tmk, DTYMK dTMP kinase, at 350,438 to 351,511 15252 mRNA_6885: 15253 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 351,614 to 354,932 15253

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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349,471 - 15251 mRNA_6883 0.48 +0.7
350,059 + +0.3
350,193 - +0.1
350,328 + -2.4
351,804 + -0.1
351,842 - -0.5
352,066 + 15253 mRNA_6885 0.14 +0.6
352,263 - 15253 mRNA_6885 0.20 +2.7

Or see this region's nucleotide sequence